› 3e79

X-ray diffraction
1.9Å resolution

Structure determination of the cancer-associated Mycoplasma hyorhinis protein Mh-p37

Released:
DOI: 10.2210/pdb3e79/pdb
PDB entry 3e79 coloured by chain, front view.
PDB entry 3e79 coloured by chain, side view.
PDB entry 3e79 coloured by chain, top view.
Source organism: Mesomycoplasma hyorhinis
Primary publication:
Structure determination of the cancer-associated Mycoplasma hyorhinis protein Mh-p37.
Sippel KH, Robbins AH, Reutzel R, Domsic J, Boehlein SK, Govindasamy L, Agbandje-McKenna M, Rosser CJ, McKenna R
Acta Crystallogr D Biol Crystallogr 64 1172-8 (2008)
PMID: 19020356

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-147326 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
High affinity transport system protein p37 Chain: A
Molecule details ›
Chain: A
Length: 403 amino acids
Theoretical weight: 46.12 KDa
Source organism: Mesomycoplasma hyorhinis
Expression system: Escherichia coli
UniProt:
  • Canonical: P15363 (Residues: 1-403; Coverage: 100%)
Gene name: p37
Sequence domains: Extracytoplasmic thiamine-binding lipoprotein
Structure domains:

Ligands and Environments

4 bound ligands:
Ligand I3C 2 x I3C
Ligand TPP 1 x TPP
Ligand CA 1 x CA
Ligand CL 1 x CL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU RUH3R
Spacegroup: P21
Unit cell:
a: 50.107Å b: 69.149Å c: 60.297Å
α: 90° β: 106.81° γ: 90°
R-values:
R R work R free
0.189 not available 0.244
Expression system: Escherichia coli

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Citations

1 review citation

Heavy Atom Detergent/Lipid Combined X-ray Crystallography for Elucidating the Structure-Function Relationships of Membrane Proteins.
Hanashima et al. (2021)
8 other articles

1 mention without citation

Diffraction data analysis in the presence of radiation damage.
Borek et al. (2010)