› 3d89

X-ray diffraction
2.07Å resolution

Crystal Structure of a Soluble Rieske Ferredoxin from Mus musculus

Released:
DOI: 10.2210/pdb3d89/pdb
PDB entry 3d89 coloured by chain, front view.
PDB entry 3d89 coloured by chain, side view.
PDB entry 3d89 coloured by chain, top view.
Source organism: Mus musculus
Primary publication:
X-ray structure of a soluble Rieske-type ferredoxin from Mus musculus.
Levin EJ, Elsen NL, Seder KD, McCoy JG, Fox BG, Phillips GN
Acta Crystallogr D Biol Crystallogr 64 933-40 (2008)
PMID: 18703841

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-185059 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Rieske domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 157 amino acids
Theoretical weight: 17.95 KDa
Source organism: Mus musculus
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q8K2P6 (Residues: 2-157; Coverage: 99%)
Gene name: Rfesd
Sequence domains: Rieske [2Fe-2S] domain
Structure domains: Rieske [2Fe-2S] iron-sulphur domain

Ligands and Environments

2 bound ligands:
Ligand FES 1 x FES
Ligand EDO 1 x EDO
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 23-ID-B, APS BEAMLINE 22-BM
Spacegroup: P43212
Unit cell:
a: 52.413Å b: 52.413Å c: 108.808Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.2 0.199 0.228
Expression system: Escherichia coli BL21

Quick links

Citations

5 mentions without citation

LigandRFs: random forest ensemble to identify ligand-binding residues from sequence information alone.
Chen et al. (2014)
4 more