› 3af9

X-ray diffraction
1.85Å resolution

Crystal Structure of Pd(allyl)/apo-C48AFr

Released:
DOI: 10.2210/pdb3af9/pdb
PDB entry 3af9 coloured by chain, front view.
PDB entry 3af9 coloured by chain, side view.
PDB entry 3af9 coloured by chain, top view.
Source organism: Equus caballus
Primary publication:
Mechanism of accumulation and incorporation of organometallic Pd complexes into the protein nanocage of apo-ferritin.
Abe S, Hikage T, Watanabe Y, Kitagawa S, Ueno T
Inorg Chem 49 6967-73 (2010)
PMID: 20586408

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo 24-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-136237 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Ferritin light chain Chain: X
Molecule details ›
Chain: X
Length: 174 amino acids
Theoretical weight: 19.84 KDa
Source organism: Equus caballus
Expression system: Escherichia coli
UniProt:
  • Canonical: P02791 (Residues: 2-175; Coverage: 99%)
Gene name: FTL
Sequence domains: Ferritin-like domain
Structure domains: Ferritin

Ligands and Environments

5 bound ligands:
Ligand SO4 1 x SO4
Ligand CD 3 x CD
Ligand PLL 1 x PLL
Ligand PD 1 x PD
Ligand EDO 7 x EDO
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL41XU
Spacegroup: F432
Unit cell:
a: 182.433Å b: 182.433Å c: 182.433Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.178 0.177 0.203
Expression system: Escherichia coli

Quick links

Citations

7 review citations

Supramolecular catalysis. Part 2: artificial enzyme mimics.
Raynal et al. (2014)
6 more