3zed

X-ray diffraction
2.2Å resolution

X-ray structure of the birnavirus VP1-VP3 complex

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-138795 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
RNA-directed RNA polymerase Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 853 amino acids
Theoretical weight: 95.63 KDa
Source organism: Infectious pancreatic necrosis virus
Expression system: Escherichia coli B
UniProt:
  • Canonical: P22173 (Residues: 1-845; Coverage: 100%)
Gene name: VP1
Sequence domains:
Structure domains:
Capsid protein VP3 Chains: D, E, F
Molecule details ›
Chains: D, E, F
Length: 242 amino acids
Theoretical weight: 27.24 KDa
Source organism: Infectious pancreatic necrosis virus
Expression system: Escherichia coli B
UniProt:
  • Canonical: P05844 (Residues: 735-972; Coverage: 25%)
Sequence domains: Birnavirus VP3 protein

Ligands and Environments

2 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I04-1
Spacegroup: P21212
Unit cell:
a: 118.27Å b: 341.87Å c: 59.7Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.181 0.179 0.214
Expression system: Escherichia coli B