› 3vy2

X-ray diffraction
1.6Å resolution

N33D mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)

Released:
DOI: 10.2210/pdb3vy2/pdb
PDB entry 3vy2 coloured by chain, front view.
PDB entry 3vy2 coloured by chain, side view.
PDB entry 3vy2 coloured by chain, top view.
Source organism: Desulfovibrio vulgaris str. 'Miyazaki F'
Entry authors: Takagi R, Nakanishi T, Kitamura M

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-175129 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
FMN-binding protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 122 amino acids
Theoretical weight: 13.15 KDa
Source organism: Desulfovibrio vulgaris str. 'Miyazaki F'
Expression system: Escherichia coli
UniProt:
  • Canonical: Q46604 (Residues: 1-122; Coverage: 100%)
Gene name: DvMF_2023
Sequence domains: Pyridoxamine 5'-phosphate oxidase
Structure domains: Electron Transport, Fmn-binding Protein; Chain A

Ligands and Environments

1 bound ligand:
Ligand FMN 2 x FMN
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PHOTON FACTORY BEAMLINE BL-5A
Spacegroup: P21
Unit cell:
a: 36.868Å b: 83.038Å c: 40.239Å
α: 90° β: 94.38° γ: 90°
R-values:
R R work R free
0.171 0.17 0.192
Expression system: Escherichia coli

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