› 3vsn

X-ray diffraction
2Å resolution

The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein

Released:
DOI: 10.2210/pdb3vsn/pdb
PDB entry 3vsn coloured by chain, front view.
PDB entry 3vsn coloured by chain, side view.
PDB entry 3vsn coloured by chain, top view.
Source organism: Autographa californica nucleopolyhedrovirus
Entry authors: Kawaguchi Y, Sugiura N, Kimata K, Kimura M, Kakuta Y

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-169467 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Non-sulfated chondroitin lyase E66 Chain: A
Molecule details ›
Chain: A
Length: 659 amino acids
Theoretical weight: 74.37 KDa
Source organism: Autographa californica nucleopolyhedrovirus
Expression system: Escherichia coli
UniProt:
  • Canonical: Q00704 (Residues: 67-704; Coverage: 94%)
Gene name: P79
Sequence domains:
Structure domains:

Ligands and Environments

2 bound ligands:
Ligand IOD 75 x IOD
Ligand GOL 8 x GOL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL38B1
Spacegroup: P62
Unit cell:
a: 118.172Å b: 118.172Å c: 100.099Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.168 0.166 0.194
Expression system: Escherichia coli

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