› 3ve4

X-ray diffraction
1.6Å resolution

Structures of ICT and PR1 intermediates from time-resolved laue crystallography

Released:
DOI: 10.2210/pdb3ve4/pdb
PDB entry 3ve4 coloured by chain, front view.
PDB entry 3ve4 coloured by chain, side view.
PDB entry 3ve4 coloured by chain, top view.
Source organism: Halorhodospira halophila
Primary publication:
Volume-conserving trans-cis isomerization pathways in photoactive yellow protein visualized by picosecond X-ray crystallography.
Jung YO, Lee JH, Kim J, Schmidt M, Moffat K, Srajer V, Ihee H
Nat Chem 5 212-20 (2013)
PMID: 23422563

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-147624 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Photoactive yellow protein Chain: A
Molecule details ›
Chain: A
Length: 125 amino acids
Theoretical weight: 13.89 KDa
Source organism: Halorhodospira halophila
Expression system: Escherichia coli
UniProt:
  • Canonical: P16113 (Residues: 1-125; Coverage: 100%)
Gene name: pyp
Sequence domains: PAS fold
Structure domains: PAS domain

Ligands and Environments

1 bound ligand:
Ligand HC4 1 x HC4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID09
Spacegroup: P63
Unit cell:
a: 66.833Å b: 66.833Å c: 40.947Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.217 not available 0.252
Expression system: Escherichia coli

Quick links

Citations

13 review citations

Learning from photobiology how to design molecular devices using a computer.
Gozem et al. (2014)
12 more

6 mentions without citation

Chronic myeloid leukemia: the paradigm of targeting oncogenic tyrosine kinase signaling and counteracting resistance for successful cancer therapy.
Soverini et al. (2018)
5 more