› 3uvc

X-ray diffraction
1.3Å resolution

MMP12 in a complex with the dimeric adduct: 5-(5-phenylhydantoin)-5-phenylhydantoin

Released:
DOI: 10.2210/pdb3uvc/pdb
PDB entry 3uvc coloured by chain, front view.
PDB entry 3uvc coloured by chain, side view.
PDB entry 3uvc coloured by chain, top view.
Source organism: Homo sapiens
Entry authors: Derbyshire DJ, Danielson H, Nystrum S

Function and Biology Details

Reaction catalysed: 
Hydrolysis of soluble and insoluble elastin (1). Specific cleavages are also produced at -Ala(14)-|-Leu- and -Tyr(16)-|-Leu- in the B chain of insulin (2).
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-153971 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Macrophage metalloelastase Chains: A, B
Molecule details ›
Chains: A, B
Length: 164 amino acids
Theoretical weight: 18.28 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P39900 (Residues: 106-263; Coverage: 35%)
Gene names: HME, MMP12
Sequence domains: Matrixin
Structure domains: Collagenase (Catalytic Domain)

Ligands and Environments

6 bound ligands:
Ligand ZN 6 x ZN
Ligand CA 7 x CA
Ligand IMD 5 x IMD
Ligand CL 6 x CL
Ligand 0D2 1 x 0D2
Ligand EDO 2 x EDO
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID23-1
Spacegroup: P21
Unit cell:
a: 39.746Å b: 60.625Å c: 58.403Å
α: 90° β: 103.1° γ: 90°
R-values:
R R work R free
0.132 0.13 0.174
Expression system: Escherichia coli BL21(DE3)

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