› 3qc6

X-ray diffraction
1.9Å resolution

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-188025 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Platelet binding protein GspB Chain: X
Molecule details ›
Chain: X
Length: 360 amino acids
Theoretical weight: 39.5 KDa
Source organism: Streptococcus gordonii
Expression system: Escherichia coli
UniProt:
  • Canonical: Q939N5 (Residues: 245-604; Coverage: 12%)
Gene name: gspB
Sequence domains: Atypical Rib domain
Structure domains:

Ligands and Environments

3 bound ligands:
Ligand CA 1 x CA
Ligand GOL 2 x GOL
Ligand HDZ 2 x HDZ
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: P212121
Unit cell:
a: 33.338Å b: 86.743Å c: 117.94Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.217 0.215 0.261
Expression system: Escherichia coli

Quick links

Citations

9 review citations

Biological roles of glycans.
Varki A. (2017)
8 more

4 mentions without citation

Interactions in bacterial biofilm development: a structural perspective.
Garnett et al. (2012)
3 more