› 3q1d

X-ray diffraction
2.15Å resolution

The B-box domain of Trim54

Released:
DOI: 10.2210/pdb3q1d/pdb
PDB entry 3q1d coloured by chain, front view.
PDB entry 3q1d coloured by chain, side view.
PDB entry 3q1d coloured by chain, top view.
Source organism: Homo sapiens
Entry authors: Walker JR, Yermekbayeva L, Mackenzie F, Dong A, Weigelt J, Bountra C, Edwards AM, Arrowsmith CH, Dhe-Paganon S

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-189843 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Tripartite motif-containing protein 54 Chain: A
Molecule details ›
Chain: A
Length: 47 amino acids
Theoretical weight: 5.39 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q9BYV2 (Residues: 122-168; Coverage: 13%)
Gene names: MURF, MURF3, RNF30, TRIM54
Sequence domains: B-box zinc finger
Structure domains: Classic Zinc Finger

Ligands and Environments

1 bound ligand:
Ligand ZN 2 x ZN
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P6222
Unit cell:
a: 47.276Å b: 47.276Å c: 87.047Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.185 0.182 0.253
Expression system: Escherichia coli BL21(DE3)

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