› 3pt1

X-ray diffraction
1.77Å resolution

Structure of DUF89 from Saccharomyces cerevisiae co-crystallized with F6P.

Released:
DOI: 10.2210/pdb3pt1/pdb
PDB entry 3pt1 coloured by chain, front view.
PDB entry 3pt1 coloured by chain, side view.
PDB entry 3pt1 coloured by chain, top view.
Source organism: Saccharomyces cerevisiae
Entry authors: Petit P, Xu X, Cui H, Savchenko A, Yakunin AF

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-170021 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Damage-control phosphatase YMR027W Chain: A
Molecule details ›
Chain: A
Length: 471 amino acids
Theoretical weight: 54.66 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli
UniProt:
  • Canonical: Q04371 (Residues: 1-470; Coverage: 100%)
Gene names: YM9711.17, YMR027W
Sequence domains: Damage-control phosphatase ARMT1-like domain
Structure domains: Transcription Elongation Factor S-II; Chain A

Ligands and Environments

3 bound ligands:
Ligand GOL 1 x GOL
Ligand F6P 1 x F6P
Ligand MG 1 x MG
1 modified residue:
Ligand MSE 7 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU FR-E SUPERBRIGHT
Spacegroup: C2
Unit cell:
a: 53.32Å b: 108.65Å c: 88.08Å
α: 90° β: 96.84° γ: 90°
R-values:
R R work R free
0.158 0.156 0.192
Expression system: Escherichia coli

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