› 3onn

X-ray diffraction
1.87Å resolution

Crystal structure of 5'-nucleotidase SDT1 from saccharomyces cerevisiae

Released:
DOI: 10.2210/pdb3onn/pdb
PDB entry 3onn coloured by chain, front view.
PDB entry 3onn coloured by chain, side view.
PDB entry 3onn coloured by chain, top view.
Source organism: Saccharomyces cerevisiae
Entry authors: Teng MK, Niu LW, Shi N

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-156712 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Suppressor of disruption of TFIIS Chain: A
Molecule details ›
Chain: A
Length: 263 amino acids
Theoretical weight: 30.23 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli
UniProt:
  • Canonical: P53078 (Residues: 26-280; Coverage: 91%)
Gene names: SDT1, SSM1, YGL224C
Sequence domains: haloacid dehalogenase-like hydrolase
Structure domains:

Ligands and Environments

5 bound ligands:
Ligand PO4 1 x PO4
Ligand GOL 5 x GOL
Ligand ACT 2 x ACT
Ligand IOD 4 x IOD
Ligand MG 1 x MG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU MICROMAX-007
Spacegroup: P212121
Unit cell:
a: 40.72Å b: 77.55Å c: 82.16Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.204 0.198 0.25
Expression system: Escherichia coli

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