› 309d

X-ray diffraction
2.6Å resolution

A DNA DECAMER WITH A STICKY END: THE CRYSTAL STRUCTURE OF D-CGACGATCGT

Released:
DOI: 10.2210/pdb309d/pdb
PDB entry 309d coloured by chain, front view.
PDB entry 309d coloured by chain, side view.
PDB entry 309d coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
A DNA decamer with a sticky end: the crystal structure of d-CGACGATCGT.
Qiu H, Dewan JC, Seeman NC
J Mol Biol 267 881-98 (1997)
PMID: 9135119

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-115984 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
DNA (5'-D(*CP*GP*AP*CP*GP*AP*TP*CP*GP*T)-3') Chains: A, B
Molecule details ›
Chains: A, B
Length: 10 nucleotides
Theoretical weight: 3.05 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU RU200
Spacegroup: P21
Unit cell:
a: 26.45Å b: 34.66Å c: 32.17Å
α: 90° β: 113.4° γ: 90°
R-values:
R R work R free
0.214 not available not available
Expression system: Not provided

Quick links

Citations

11 review citations

Nanomaterials based on DNA.
Seeman NC. (2010)
10 more

2 mentions without citation

Degradation of a benzene-toluene mixture by hydrocarbon-adapted bacterial communities.
Aburto et al. (2011)
1 more