› 2zy6

X-ray diffraction
1.75Å resolution

Crystal structure of a truncated tRNA, TPHE39A

Released:
DOI: 10.2210/pdb2zy6/pdb
PDB entry 2zy6 coloured by chain, front view.
PDB entry 2zy6 coloured by chain, side view.
PDB entry 2zy6 coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Deduced RNA binding mechanism of ThiI based on structural and binding analyses of a minimal RNA ligand.
Tanaka Y, Yamagata S, Kitago Y, Yamada Y, Chimnaronk S, Yao M, Tanaka I
RNA 15 1498-506 (2009)
PMID: 19509301

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-196609 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
phenylalanyl transfer RNA Chain: A
Molecule details ›
Chain: A
Length: 39 nucleotides
Theoretical weight: 12.58 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

3 bound ligands:
Ligand MG 1 x MG
Ligand CL 1 x CL
Ligand CA 7 x CA
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PHOTON FACTORY BEAMLINE AR-NW12A
Spacegroup: P6122
Unit cell:
a: 62.366Å b: 62.366Å c: 115.2Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.209 0.207 0.24
Expression system: Not provided

Quick links

Citations

3 review citations

Survey of the year 2009: applications of isothermal titration calorimetry.
Falconer et al. (2011)
2 more

5 mentions without citation

Robust structural analysis of native biological macromolecules from multi-crystal anomalous diffraction data.
Liu et al. (2013)
4 more