Assemblies
Assembly Name:
Large ribosomal protein and RNA
Multimeric state:
hetero 31-mer
Accessible surface area:
468618.8 Å2
Buried surface area:
132090.43 Å2
Dissociation area:
1,883.97
Å2
Dissociation energy (ΔGdiss):
17.44
kcal/mol
Dissociation entropy (TΔSdiss):
13.97
kcal/mol
Symmetry number:
1
PDBe Complex ID:
PDB-CPX-155875
Macromolecules
Chain: A
Length: 274 amino acids
Theoretical weight: 29.98 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam:
InterPro:
SCOP:
Length: 274 amino acids
Theoretical weight: 29.98 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RXJ9 (Residues: 2-275; Coverage: 100%)
Pfam:
InterPro:
- Large ribosomal subunit protein uL2, bacterial/organellar-type
- Nucleic acid-binding, OB-fold
- Large ribosomal subunit protein uL2
- Large ribosomal subunit protein uL2, RNA-binding domain
- Large ribosomal subunit protein uL2, domain 2
- Large ribosomal subunit protein uL2, C-terminal
- Translation protein SH3-like domain superfamily
- Large ribosomal subunit protein uL2, domain 3
- Large ribosomal subunit protein uL2, conserved site
SCOP:
Chain: B
Length: 211 amino acids
Theoretical weight: 22.48 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal protein L3
InterPro:
Length: 211 amino acids
Theoretical weight: 22.48 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RXK2 (Residues: 1-211; Coverage: 100%)
Pfam: Ribosomal protein L3
InterPro:
- Translation protein, beta-barrel domain superfamily
- Large ribosomal subunit protein uL3, bacterial/organelle-type
- Large ribosomal subunit protein uL3
- Large ribosomal subunit protein uL3, conserved site
Chain: C
Length: 205 amino acids
Theoretical weight: 22.31 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal protein L4/L1 family
InterPro:
Length: 205 amino acids
Theoretical weight: 22.31 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RXK1 (Residues: 1-205; Coverage: 100%)
Pfam: Ribosomal protein L4/L1 family
InterPro:
- Large ribosomal subunit protein uL4 domain superfamily
- Large ribosomal subunit protein uL4-like
- Large ribosomal subunit protein uL4
Chain: D
Length: 180 amino acids
Theoretical weight: 20.38 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam:
InterPro:
SCOP: Ribosomal protein L5
Length: 180 amino acids
Theoretical weight: 20.38 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RXJ0 (Residues: 1-180; Coverage: 100%)
Pfam:
InterPro:
- Large ribosomal subunit protein uL5
- Large ribosomal subunit protein uL5, bacterial-type
- Large ribosomal subunit protein uL5 domain superfamily
- Large ribosomal subunit protein uL5, N-terminal
- Large ribosomal subunit protein uL5, C-terminal
SCOP: Ribosomal protein L5
Chain: E
Length: 185 amino acids
Theoretical weight: 19.61 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal protein L6
InterPro:
SCOP: Ribosomal protein L6
Length: 185 amino acids
Theoretical weight: 19.61 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RSL3 (Residues: 1-185; Coverage: 100%)
Pfam: Ribosomal protein L6
InterPro:
- Large ribosomal subunit protein uL6-like
- Large ribosomal subunit protein uL6, bacterial-type
- Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily
- Large ribosomal subunit protein uL6, alpha-beta domain
SCOP: Ribosomal protein L6
Chain: F
Length: 144 amino acids
Theoretical weight: 14.89 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam:
InterPro:
SCOP:
Length: 144 amino acids
Theoretical weight: 14.89 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RSS7 (Residues: 1-144; Coverage: 100%)
Pfam:
InterPro:
- Large ribosomal subunit protein uL11, N-terminal domain superfamily
- Ribosomal protein uL11
- Large ribosomal subunit protein uL11, bacterial-type
- Large ribosomal subunit protein uL11, N-terminal
- Large ribosomal subunit protein uL11, C-terminal domain superfamily
- Large ribosomal subunit protein uL11, C-terminal
- Large ribosomal subunit protein uL11, conserved site
SCOP:
Chain: G
Length: 174 amino acids
Theoretical weight: 19.22 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal protein L13
InterPro:
SCOP: Ribosomal protein L13
Length: 174 amino acids
Theoretical weight: 19.22 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RXY1 (Residues: 1-174; Coverage: 100%)
Pfam: Ribosomal protein L13
InterPro:
- Large ribosomal subunit protein uL13
- Large ribosomal subunit protein uL13 superfamily
- Large ribosomal subunit protein uL13, bacterial-type
- Large ribosomal subunit protein uL13, conserved site
SCOP: Ribosomal protein L13
Chain: H
Length: 134 amino acids
Theoretical weight: 14.26 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal protein L14p/L23e
InterPro:
SCOP: Ribosomal protein L14
Length: 134 amino acids
Theoretical weight: 14.26 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RXJ2 (Residues: 1-134; Coverage: 100%)
Pfam: Ribosomal protein L14p/L23e
InterPro:
- Large ribosomal subunit protein uL14
- Large ribosomal subunit protein uL14, bacterial-type
- Large ribosomal subunit protein uL14 superfamily
- Large ribosomal subunit protein uL14, conserved site
SCOP: Ribosomal protein L14
Chain: I
Length: 156 amino acids
Theoretical weight: 16.89 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
InterPro:
Length: 156 amino acids
Theoretical weight: 16.89 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RSK9 (Residues: 1-156; Coverage: 100%)
Pfam: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
InterPro:
- Large ribosomal subunit protein uL15, bacterial-type
- Large ribosomal subunit protein uL15
- Large ribosomal subunit protein uL15/eL18 superfamily
- Large ribosomal subunit protein uL15/eL18
- Large ribosomal subunit protein uL15, conserved site
Chain: J
Length: 142 amino acids
Theoretical weight: 16.26 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal protein L16p/L10e
InterPro:
SCOP: Ribosomal protein L16p
Length: 142 amino acids
Theoretical weight: 16.26 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RXJ5 (Residues: 1-141; Coverage: 100%)
Pfam: Ribosomal protein L16p/L10e
InterPro:
- Large ribosomal subunit protein uL16, bacterial-type
- Large ribosomal subunit protein uL16 superfamily
- Large ribosomal subunit protein uL16
- Large ribosomal subunit protein uL16 domain
- Large ribosomal subunit protein uL16, conserved site
SCOP: Ribosomal protein L16p
Chain: K
Length: 116 amino acids
Theoretical weight: 12.93 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal protein L17
InterPro:
SCOP: Prokaryotic ribosomal protein L17
Length: 116 amino acids
Theoretical weight: 12.93 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RSJ5 (Residues: 1-116; Coverage: 100%)
Pfam: Ribosomal protein L17
InterPro:
- Large ribosomal subunit protein bL17
- Large ribosomal subunit protein bL17 superfamily
- Large ribosomal subunit protein bL17, conserved site
SCOP: Prokaryotic ribosomal protein L17
Chain: L
Length: 114 amino acids
Theoretical weight: 12.16 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
InterPro:
CATH: Nucleotidyltransferase; domain 5
SCOP: Ribosomal protein L18 and S11
Length: 114 amino acids
Theoretical weight: 12.16 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RSL2 (Residues: 1-114; Coverage: 100%)
Pfam: Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
InterPro:
CATH: Nucleotidyltransferase; domain 5
SCOP: Ribosomal protein L18 and S11
Chain: M
Length: 166 amino acids
Theoretical weight: 18.35 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal protein L19
InterPro:
Length: 166 amino acids
Theoretical weight: 18.35 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RWB4 (Residues: 1-166; Coverage: 100%)
Pfam: Ribosomal protein L19
InterPro:
- Translation protein SH3-like domain superfamily
- Large ribosomal subunit protein bL19
- Large ribosomal subunit protein bL19 superfamily
- Large ribosomal subunit protein bL19, conserved site
Chain: N
Length: 118 amino acids
Theoretical weight: 13.99 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal protein L20
InterPro:
SCOP: Ribosomal protein L20
Length: 118 amino acids
Theoretical weight: 13.99 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RSW7 (Residues: 1-118; Coverage: 100%)
Pfam: Ribosomal protein L20
InterPro:
SCOP: Ribosomal protein L20
Chain: O
Length: 100 amino acids
Theoretical weight: 11.17 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal prokaryotic L21 protein
InterPro:
Length: 100 amino acids
Theoretical weight: 11.17 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RY64 (Residues: 1-100; Coverage: 100%)
Pfam: Ribosomal prokaryotic L21 protein
InterPro:
- Large ribosomal subunit protein bL21
- Large ribosomal subunit protein bL21-like
- Large ribosomal subunit protein bL21-like superfamily
Chain: P
Length: 134 amino acids
Theoretical weight: 15.19 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal protein L22p/L17e
InterPro:
SCOP: Ribosomal protein L22
Length: 134 amino acids
Theoretical weight: 15.19 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RXJ7 (Residues: 1-134; Coverage: 100%)
Pfam: Ribosomal protein L22p/L17e
InterPro:
- Ribosomal protein uL22 superfamily
- Large ribosomal subunit protein uL22, bacterial/organelle-type
- Large ribosomal subunit protein uL22, bacterial/chloroplast-type
- Large ribosomal subunit protein uL22
- Large ribosomal subunit protein uL22, conserved site
SCOP: Ribosomal protein L22
Chain: Q
Length: 95 amino acids
Theoretical weight: 10.54 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal protein L23
InterPro:
SCOP: L23p
Length: 95 amino acids
Theoretical weight: 10.54 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RXK0 (Residues: 1-95; Coverage: 100%)
Pfam: Ribosomal protein L23
InterPro:
- Ribosomal protein uL23/eL15/eS24 core domain superfamily
- Large ribosomal subunit protein uL23-like
- Nucleotide-binding alpha-beta plait domain superfamily
- Large ribosomal subunit protein uL23, conserved site
SCOP: L23p
Chain: R
Length: 115 amino acids
Theoretical weight: 12.38 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam:
InterPro:
Length: 115 amino acids
Theoretical weight: 12.38 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RXJ1 (Residues: 1-115; Coverage: 100%)
Pfam:
InterPro:
- Large ribosomal subunit protein uL2, domain 2
- Translation protein SH3-like domain superfamily
- Large ribosomal subunit protein uL24
- KOW
- Large ribosomal subunit protein uL24, conserved site
- Large ribosomal subunit protein uL24, KOW domain
Chain: S
Length: 237 amino acids
Theoretical weight: 25.42 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam:
InterPro:
SCOP: Ribosomal protein L25-like
Length: 237 amino acids
Theoretical weight: 25.42 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RX88 (Residues: 1-237; Coverage: 100%)
Pfam:
InterPro:
- Ribosomal protein bL25, long-form
- Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminal
- Large ribosomal subunit protein bL25, L25 domain
- Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamily
- Large ribosomal subunit protein bL25, C-terminal
- Large ribosomal subunit protein bL25, beta domain
SCOP: Ribosomal protein L25-like
Chain: T
Length: 91 amino acids
Theoretical weight: 9.61 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal L27 protein
InterPro:
SCOP: Ribosomal L27 protein
Length: 91 amino acids
Theoretical weight: 9.61 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RY65 (Residues: 1-91; Coverage: 100%)
Pfam: Ribosomal L27 protein
InterPro:
SCOP: Ribosomal L27 protein
Chain: U
Length: 81 amino acids
Theoretical weight: 8.98 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal L28 family
InterPro:
Length: 81 amino acids
Theoretical weight: 8.98 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RRG8 (Residues: 1-81; Coverage: 100%)
Pfam: Ribosomal L28 family
InterPro:
- Large ribosomal subunit protein bL28, bacterial-type
- Large ribosomal subunit protein bL28/bL31-like superfamily
- Large ribosomal subunit protein bL28
- Large ribosomal subunit protein bL28 superfamily
Chain: V
Length: 67 amino acids
Theoretical weight: 7.77 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal L29 protein
InterPro:
Length: 67 amino acids
Theoretical weight: 7.77 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RXJ4 (Residues: 1-67; Coverage: 100%)
Pfam: Ribosomal L29 protein
InterPro:
- Large ribosomal subunit protein uL29
- Large ribosomal subunit protein uL29 superfamily
- Large ribosomal subunit protein uL29, conserved site
Chain: W
Length: 55 amino acids
Theoretical weight: 6.08 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal protein L30p/L7e
InterPro:
SCOP: Ribosomal protein L30p/L7e
Length: 55 amino acids
Theoretical weight: 6.08 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RSL0 (Residues: 1-55; Coverage: 100%)
Pfam: Ribosomal protein L30p/L7e
InterPro:
- Large ribosomal subunit protein uL30, bacterial-type
- Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamily
- Large ribosomal subunit protein uL30-like, ferredoxin-like fold domain
SCOP: Ribosomal protein L30p/L7e
Chain: Z
Length: 60 amino acids
Theoretical weight: 6.81 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal L32p protein family
InterPro:
Length: 60 amino acids
Theoretical weight: 6.81 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: P49228 (Residues: 1-60; Coverage: 100%)
Pfam: Ribosomal L32p protein family
InterPro:
- Zinc-binding ribosomal protein
- Large ribosomal subunit protein bL32
- Large ribosomal subunit protein bL32, bacterial type
Chain: 1
Length: 55 amino acids
Theoretical weight: 6.37 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal protein L33
InterPro:
Length: 55 amino acids
Theoretical weight: 6.37 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RSS4 (Residues: 1-55; Coverage: 100%)
Pfam: Ribosomal protein L33
InterPro:
- Large ribosomal subunit protein bL33
- Large ribosomal subunit protein bL33 superfamily
- Zinc-binding ribosomal protein
- Large ribosomal subunit protein bL33, conserved site
Chain: 2
Length: 47 amino acids
Theoretical weight: 5.63 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal protein L34
InterPro:
SCOP: Ribosomal protein L34p
Length: 47 amino acids
Theoretical weight: 5.63 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RSH2 (Residues: 1-47; Coverage: 100%)
Pfam: Ribosomal protein L34
InterPro:
SCOP: Ribosomal protein L34p
Chain: 3
Length: 66 amino acids
Theoretical weight: 7.45 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal protein L35
InterPro:
Length: 66 amino acids
Theoretical weight: 7.45 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RSW6 (Residues: 1-66; Coverage: 100%)
Pfam: Ribosomal protein L35
InterPro:
- Large ribosomal subunit protein bL35
- Large ribosomal subunit protein bL35-like
- Large ribosomal subunit protein bL35 superfamily
- Large ribosomal subunit protein bL35, conserved site
Chain: 4
Length: 37 amino acids
Theoretical weight: 4.32 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam: Ribosomal protein L36
InterPro:
SCOP: Ribosomal protein L36
Length: 37 amino acids
Theoretical weight: 4.32 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RSK0 (Residues: 1-37; Coverage: 100%)
Pfam: Ribosomal protein L36
InterPro:
SCOP: Ribosomal protein L36
Chain: 5
Length: 122 amino acids
Theoretical weight: 12.64 KDa
Source organism: Deinococcus radiodurans
UniProt:
Pfam:
InterPro:
Length: 122 amino acids
Theoretical weight: 12.64 KDa
Source organism: Deinococcus radiodurans
UniProt:
- Canonical: Q9RST0 (Residues: 1-122; Coverage: 100%)
Pfam:
InterPro:
- Large ribosomal subunit protein bL12
- Large ribosomal subunit protein bL12, oligomerization domain superfamily
- Large ribosomal subunit protein bL12, oligomerization
- Ribosomal protein bL12, C-terminal/adaptor protein ClpS-like
- Large ribosomal subunit protein bL12, C-terminal
Name:
23S ribosomal RNA
Representative chains: X
Length: 2880 nucleotides
Theoretical weight: 933.41 KDa
Rfam: Bacterial large subunit ribosomal RNA
Representative chains: X
Length: 2880 nucleotides
Theoretical weight: 933.41 KDa
Rfam: Bacterial large subunit ribosomal RNA
Name:
5S ribosomal RNA
Representative chains: Y
Length: 122 nucleotides
Theoretical weight: 39.28 KDa
Rfam: 5S ribosomal RNA
Representative chains: Y
Length: 122 nucleotides
Theoretical weight: 39.28 KDa
Rfam: 5S ribosomal RNA