› 2zg8

X-ray diffraction
1.6Å resolution

Crystal Structure of Pd(allyl)/apo-H49AFr

Released:
DOI: 10.2210/pdb2zg8/pdb
PDB entry 2zg8 coloured by chain, front view.
PDB entry 2zg8 coloured by chain, side view.
PDB entry 2zg8 coloured by chain, top view.
Source organism: Equus caballus
Primary publication:
Control of the coordination structure of organometallic palladium complexes in an apo-ferritin cage.
Abe S, Niemeyer J, Abe M, Takezawa Y, Ueno T, Hikage T, Erker G, Watanabe Y
J Am Chem Soc 130 10512-4 (2008)
PMID: 18636721

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo 24-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-136237 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Ferritin light chain Chain: X
Molecule details ›
Chain: X
Length: 174 amino acids
Theoretical weight: 19.79 KDa
Source organism: Equus caballus
Expression system: Escherichia coli
UniProt:
  • Canonical: P02791 (Residues: 2-175; Coverage: 99%)
Gene name: FTL
Sequence domains: Ferritin-like domain
Structure domains: Ferritin

Ligands and Environments

5 bound ligands:
Ligand PD 1 x PD
Ligand CD 1 x CD
Ligand SO4 4 x SO4
Ligand PLL 3 x PLL
Ligand EDO 7 x EDO
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU
Spacegroup: F432
Unit cell:
a: 181.339Å b: 181.339Å c: 181.339Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.189 0.188 0.211
Expression system: Escherichia coli

Quick links

Citations

16 review citations

Protein design: toward functional metalloenzymes.
Yu et al. (2014)
15 more

1 mention without citation

Cryo-EM single-particle structure refinement and map calculation using Servalcat.
Yamashita et al. (2021)