› 2z18

X-ray diffraction
1.15Å resolution

Phase transition of monoclinic lysozyme crystal soaked in a 10% NaCl solution

Released:
DOI: 10.2210/pdb2z18/pdb
PDB entry 2z18 coloured by chain, front view.
PDB entry 2z18 coloured by chain, side view.
PDB entry 2z18 coloured by chain, top view.
Source organism: Gallus gallus
Primary publication:
Effect of a sodium ion on the dehydration-induced phase transition of monoclinic lysozyme crystals.
Harata K, Akiba T
Acta Crystallogr D Biol Crystallogr 63 1016-21 (2007)
PMID: 17704571

Function and Biology Details

Reaction catalysed: 
Hydrolysis of (1->4)-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues in a peptidoglycan and between N-acetyl-D-glucosamine residues in chitodextrins
Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-132831 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Lysozyme C Chain: A
Molecule details ›
Chain: A
Length: 129 amino acids
Theoretical weight: 14.33 KDa
Source organism: Gallus gallus
UniProt:
  • Canonical: P00698 (Residues: 19-147; Coverage: 100%)
Gene name: LYZ
Sequence domains: C-type lysozyme/alpha-lactalbumin family
Structure domains: Lysozyme

Ligands and Environments

3 bound ligands:
Ligand NA 1 x NA
Ligand CL 4 x CL
Ligand HDZ 1 x HDZ
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: MACSCIENCE
Spacegroup: P21
Unit cell:
a: 26.622Å b: 60.588Å c: 31.223Å
α: 90° β: 111.44° γ: 90°
R-values:
R R work R free
0.156 0.156 0.176

Quick links

Citations

4 citation in other articles

Increasing the X-ray diffraction power of protein crystals by dehydration: the case of bovine serum albumin and a survey of literature data.
Russo Krauss et al. (2012)
3 more

1 mention without citation

Calculation of Second Virial Coefficients of Atomistic Proteins Using Fast Fourier Transform.
Qin et al. (2019)