2vtn Summary

pdbe.org/2vtn
spacer

IDENTIFICATION OF N-(4-PIPERIDINYL)-4-(2,6-DICHLOROBENZOYLAMINO)-1H-PYRAZOLE-3-CARBOXAMIDE (AT7519), A NOVEL CYCLIN DEPENDENT KINASE INHIBITOR USING FRAGMENT-BASED X-RAY CRYSTALLOGRAPHY AND STRUCTURE BASED DRUG DESIGN.

The structure was published by Wyatt, P.G., Woodhead, A.J., Berdini, V., et al., Trewartha, G., Walker, M.T., and Woolford, A.J., in 2008 in a paper entitled "Identification of N-(4-Piperidinyl)-4-(2,6-Dichlorobenzoylamino)-1H-Pyrazole-3-Carboxamide (at7519), a Novel Cyclin Dependent Kinase Inhibitor Using Fragment-Based X-Ray Crystallography and Structure Based Drug Design." (abstract).

This crystal structure was determined using X-ray diffraction at a resolution of 2.2 Å and deposited in 2008.

The experimental data on which the structure is based was also deposited.

The PDB entry contains the structure of CELL DIVISION PROTEIN KINASE 2. This molecule has the UniProt identifier P24941 (CDK2_HUMAN)search. The sample contained 298 residues which is 100% of the natural sequence. Out of 298 residues 274 were observed and are deposited in the PDB.

It also contains one or more heterogenic compounds (e.g., ligands, co-factors, ions, modified amino acids, etc.); see here for a complete list.

The molecule is most likely monomeric.

The following tables show cross-reference information to other databases (to obtain a list of all PDB entries sharing the same property or classification, click on the magnifying glass icon):


Chain Name UniProt Name of source organism % of UniProt sequence present in the sample Residues in the sample molecules % of residues observed
A CELL DIVISION PROTEIN KINASE 2 P24941 (1-298) (CDK2_HUMAN)search Homo sapienssearch 97% 298 91%


This entry contains 1 unique UniProt protein:

UniProt accession Name Organism PDB
P24941 (1 - 298) CELL DIVISION PROTEIN KINASE 2 Homo sapiens

Chain Structural classification (CATH) Sequence family (Pfam)
A (P24941) Phosphorylase Kinase; domain 1search, Transferase(Phosphotransferase) domain 1search PF00069: Protein kinase domainsearch

Chain ID Biological process (GO) Molecular function (GO) Cellular component (GO)
A (P24941) protein phosphorylationsearch regulation of ubiquitin-protein ligase activity involved in mitotic cell cyclesearch anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic processsearch G1/S transition of mitotic cell cyclesearch histone phosphorylationsearch peptidyl-serine phosphorylationsearch phosphorylationsearch DNA replicationsearch Ras protein signal transductionsearch regulation of gene silencingsearch DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrestsearch centrosome duplicationsearch cellular response to DNA damage stimulussearch meiotic cell cyclesearch positive regulation of DNA-dependent DNA replication initiationsearch meiotic nuclear divisionsearch mitotic cell cyclesearch cell divisionsearch positive regulation of transcription, DNA-templatedsearch positive regulation of cell proliferationsearch mitotic nuclear divisionsearch G2/M transition of mitotic cell cyclesearch potassium ion transportsearch DNA repairsearch mitotic G1 DNA damage checkpointsearch cellular response to nitric oxidesearch blood coagulationsearch cell cyclesearch protein kinase activitysearch ATP bindingsearch transferase activity, transferring phosphorus-containing groupssearch cyclin-dependent protein serine/threonine kinase activitysearch protein bindingsearch nucleotide bindingsearch transferase activitysearch metal ion bindingsearch protein serine/threonine kinase activitysearch cyclin bindingsearch histone kinase activitysearch kinase activitysearch nucleoplasmsearch Y chromosomesearch microtubule organizing centersearch cytoplasmsearch cytosolsearch X chromosomesearch centrosomesearch transcription factor complexsearch nucleussearch cytoskeletonsearch cyclin-dependent protein kinase holoenzyme complexsearch Cajal bodysearch endosomesearch chromosome, telomeric regionsearch condensed chromosomesearch

Chain InterPro annotation
A Protein kinase domainsearch Serine/threonine/dual specificity protein kinase, catalytic domainsearch Serine/threonine-protein kinase, active sitesearch Protein kinase-like domainsearch Protein kinase, ATP binding sitesearch