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EBI PDBe PDBeView

PDBe Entry: 2vho view

STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME (PART 3 OF 4)
Summary
Header RIBOSOMEsearch
Method X-RAY DIFFRACTION
Experiment Resolution: 3.74 Å, R-factor: 25.9%, Free R-factor: 32.3%, Spacegroup: P 21 21 21
Released 26/02/2008, deposition: 22/11/2007, last revision: 24/02/2009
Authors Bingel-Erlenmeyer, R.search; Kohler, R.search; Kramer, G.search; Sandikci, A.search; Antolic, S.search; Maier, T.search; Schaffitzel, C.search; Wiedmann, B.search; Bukau, B.search; Ban, N.search
Primary citation A Peptide Deformylase-Ribosome Complex Reveals Mechanism of Nascent Chain Processing.
NATUREsearch vol:452, pag:108 (2008) [PubMed ID 18288106 ]search
Keywords TRANSLATIONsearch, PEPTIDE DEFORMYLASEsearch, RNA-PROTEIN COMPLEXsearch, RIBOSOMAL PROTEINsearch, RIBONUCLEOPROTEINsearch, 30S RIBOSOMAL SUBUNITsearch, ANTIBIOTIC RESISTANCEsearch, RIBOSOMEsearch, NASCENT CHAIN PROCESSINGsearch, RNA-BINDINGsearch, TRANSLATION REGULATIONsearch, TRNA-BINDINGsearch, PROTEIN BIOSYNTHESISsearch
Organism Escherichia coli 562search(A B C D E F G H I J K L M N O P Q R S T U)
UniProt 30S ribosomal protein S2 P0A7V1search (B)
30S ribosomal protein S3 P0A7V4search (C)
30S ribosomal protein S4 Q0TCG5search (D)
30S ribosomal protein S5 P0A7W1search (E)
30S ribosomal protein S6 P0A4D0search (F)
30S ribosomal protein S7 P66606search (G)
30S ribosomal protein S8 A1AGJ5search (H)
30S ribosomal protein S9 P0A7X3search (I)
30S ribosomal protein S10 P0A7R5search (J)
30S ribosomal protein S11 A1AGI8search (K)
30S ribosomal protein S12 P0A7S3search (L)
30S ribosomal protein S13 P0A7T1search (M)
30S ribosomal protein S14 P0AG59search (N)
30S ribosomal protein S15 Q8X9M2search (O)
30S ribosomal protein S16 P0A7T3search (P)
30S ribosomal protein S17 Q1R616search (Q)
30S ribosomal protein S18 P0A7T7search (R)
30S ribosomal protein S19 Q0TCE5search (S)
30S ribosomal protein S20 Q0TLW7search (T)
30S ribosomal protein S21 P68680search (U)
Solvent A, E, I, L, N, P, T
Related entries 2vhm, 2vhn, 2vho, 2vhp, 2vhm, 2vhn, 2vhp
Polymers
Id Name Type UniProt Residues Observed
A 16S RIBOSOMAL RNA RNA
1542 99%
B 30S RIBOSOMAL PROTEIN S2 Protein P0A7V1 (RS2_ECOL6)search
 240 91%
C 30S RIBOSOMAL PROTEIN S3 Protein P0A7V4 (RS3_ECOL6)search
 232 89%
D 30S RIBOSOMAL PROTEIN S4 Protein Q0TCG5 (RS4_ECOL5)search
 205 100%
E 30S RIBOSOMAL PROTEIN S5 Protein P0A7W1 (RS5_ECOLI)search
 166 90%
F 30S RIBOSOMAL PROTEIN S6 Protein P0A4D0 (RS6_ECOL6)search
 135 74%
G 30S RIBOSOMAL PROTEIN S7 Protein P66606 (RS7_ECOL6)search
 178 84%
H 30S RIBOSOMAL PROTEIN S8 Protein A1AGJ5 (RS8_ECOK1)search
 129 100%
I 30S RIBOSOMAL PROTEIN S9 Protein P0A7X3 (RS9_ECOLI)search
 129 98%
J 30S RIBOSOMAL PROTEIN S10 Protein P0A7R5 (RS10_ECOLI)search
 103 96%
K 30S RIBOSOMAL PROTEIN S11 Protein A1AGI8 (RS11_ECOK1)search
 128 91%
L 30S RIBOSOMAL PROTEIN S12 Protein P0A7S3 (RS12_ECOLI)search
 123 100%
M 30S RIBOSOMAL PROTEIN S13 Protein P0A7T1 (RS13_ECO57)search
 117 98%
N 30S RIBOSOMAL PROTEIN S14 Protein P0AG59 (RS14_ECOLI)search
 100 96%
O 30S RIBOSOMAL PROTEIN S15 Protein Q8X9M2 (RS15_ECO57)search
 89 98%
P 30S RIBOSOMAL PROTEIN S16 Protein P0A7T3 (RS16_ECOLI)search
 82 100%
Q 30S RIBOSOMAL PROTEIN S17 Protein Q1R616 (RS17_ECOUT)search
 83 97%
R 30S RIBOSOMAL PROTEIN S18 Protein P0A7T7 (RS18_ECOLI)search
 74 75%
S 30S RIBOSOMAL PROTEIN S19 Protein Q0TCE5 (RS19_ECOL5)search
 91 87%
T 30S RIBOSOMAL PROTEIN S20 Protein Q0TLW7 (RS20_ECOL5)search
 86 98%
U 30S RIBOSOMAL PROTEIN S21 Protein P68680 (RS21_ECOL6)search
 71 73%
Heterogens
Id Name Ligands
Z MAGNESIUM ION MG search
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