2scu Summary


A detailed description of the structure of Succinyl-COA synthetase from Escherichia coli

The structure was published by Fraser, M.E., James, M.N., Bridger, W.A., and Wolodko, W.T., in 1999 in a paper entitled "A detailed structural description of Escherichia coli succinyl-CoA synthetase." (abstract).

This crystal structure was determined using X-ray diffraction at a resolution of 2.3 Å and deposited in 1998.

The experimental data on which the structure is based was also deposited.

This PDB entry contains a complex of 2 biomacromolecules, namely PROTEIN (SUCCINYL-COA LIGASE).

It also contains one or more heterogenic compounds (e.g., ligands, co-factors, ions, modified amino acids, etc.); see here for a complete list.

The molecule has more than one probable quaternary state observed. For more details see the quaternary structure page.

The following tables show cross-reference information to other databases (to obtain a list of all PDB entries sharing the same property or classification, click on the magnifying glass icon):

Chain Name UniProt Name of source organism % of UniProt sequence present in the sample Residues in the sample molecules % of residues observed
A PROTEIN (SUCCINYL-COA LIGASE) P0AGE9 (2-289) (SUCD_ECOLI)search Escherichia coli K-12search 99% 288 99%
D PROTEIN (SUCCINYL-COA LIGASE) P0AGE9 (2-289) (SUCD_ECOLI)search Escherichia coli K-12search 99% 288 99%
B PROTEIN (SUCCINYL-COA LIGASE) P0A836 (1-388) (SUCC_ECOLI)search Escherichia coli K-12search 99% 388 99%
E PROTEIN (SUCCINYL-COA LIGASE) P0A836 (1-388) (SUCC_ECOLI)search Escherichia coli K-12search 99% 388 99%

This entry contains 2 unique UniProt proteins:

UniProt accession Name Organism PDB
P0AGE9 (2 - 289) PROTEIN (SUCCINYL-COA LIGASE) Escherichia coli
P0A836 (1 - 388) PROTEIN (SUCCINYL-COA LIGASE) Escherichia coli

Chain Structural classification (SCOP) Structural classification (CATH) Sequence family (Pfam)
A, D (P0AGE9) CoA-binding domainsearch, Succinyl-CoA synthetase domainssearch NAD(P)-binding Rossmann-like Domainsearch, Succinyl-CoA synthetase domainssearch PF00549: CoA-ligasesearch, PF02629: CoA binding domainsearch
B, E (P0A836) Succinyl-CoA synthetase domainssearch, Succinyl-CoA synthetase, beta-chain, N-terminal domainsearch ATP-grasp fold, B domainsearch, ATP-grasp fold, A domainsearch, Succinyl-CoA synthetase domainssearch PF00549: CoA-ligasesearch, PF08442: ATP-grasp domainsearch

Chain ID Molecular function (GO) Cellular component (GO) Biological process (GO)
A, D (P0AGE9) protein bindingsearch nucleotide bindingsearch cofactor bindingsearch ATP bindingsearch ligase activitysearch succinate-CoA ligase (ADP-forming) activitysearch catalytic activitysearch ATP citrate synthase activitysearch cytoplasmsearch succinate-CoA ligase complex (ADP-forming)search tricarboxylic acid cyclesearch metabolic processsearch protein autophosphorylationsearch
B, E (P0A836) catalytic activitysearch ATP bindingsearch metal ion bindingsearch ligase activitysearch protein bindingsearch succinate-CoA ligase (ADP-forming) activitysearch magnesium ion bindingsearch manganese ion bindingsearch nucleotide bindingsearch cytoplasmsearch succinate-CoA ligase complex (ADP-forming)search metabolic processsearch tricarboxylic acid cyclesearch

Chain InterPro annotation
A, D CoA-bindingsearch Succinyl-CoA ligase, alpha subunitsearch ATP-citrate lyase/succinyl-CoA ligasesearch NAD(P)-binding domainsearch Succinyl-CoA synthetase-likesearch ATP-citrate lyase/succinyl-CoA ligase, active sitesearch
B, E Succinyl-CoA synthetase, beta subunitsearch ATP-citrate lyase/succinyl-CoA ligasesearch ATP-grasp foldsearch ATP-grasp fold, succinyl-CoA synthetase-typesearch ATP-grasp fold, subdomain 1search ATP-grasp fold, subdomain 2search Succinyl-CoA synthetase-likesearch Succinyl-CoA synthetase, beta subunit, conserved sitesearch