› 2qjl

X-ray diffraction
1.44Å resolution

Crystal structure of Urm1

Released:
DOI: 10.2210/pdb2qjl/pdb
PDB entry 2qjl coloured by chain, front view.
PDB entry 2qjl coloured by chain, side view.
PDB entry 2qjl coloured by chain, top view.
Source organism: Saccharomyces cerevisiae
Primary publication:
Crystal structure of the dimeric Urm1 from the yeast Saccharomyces cerevisiae.
Yu J, Zhou CZ
Proteins 71 1050-5 (2008)
PMID: 18260097

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-154141 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Ubiquitin-related modifier 1 Chain: A
Molecule details ›
Chain: A
Length: 99 amino acids
Theoretical weight: 11.04 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli
UniProt:
  • Canonical: P40554 (Residues: 1-99; Coverage: 100%)
Gene names: URM1, YIL008W
Sequence domains: Urm1 (Ubiquitin related modifier)
Structure domains: Ubiquitin-like (UB roll)

Ligands and Environments

2 bound ligands:
Ligand MG 2 x MG
Ligand EDO 1 x EDO
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU
Spacegroup: P21212
Unit cell:
a: 50.384Å b: 63.009Å c: 28.893Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.168 0.166 0.198
Expression system: Escherichia coli

Quick links

Citations

2 review citations

Ubiquitin-like proteins.
van der Veen et al. (2012)
1 more

10 mentions without citation

Ubiquitin and Ubiquitin-Like Proteins and Domains in Ribosome Production and Function: Chance or Necessity?
Martín-Villanueva et al. (2021)
9 more