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Crystal structure of Glycerophosphodiester Phosphodiesterase (GDPD) from T. tengcongensis

Source organism: Caldanaerobacter subterraneus subsp. tengcongensis MB4
Biochemical function: metal ion binding
Biological process: lipid metabolic process
Cellular component: not assigned

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EC 3.1.4.46: Glycerophosphodiester phosphodiesterase

Reaction catalysed:
A glycerophosphodiester + H(2)O = an alcohol + sn-glycerol 3-phosphate
Systematic name:
Glycerophosphodiester glycerophosphohydrolase
Alternative Name(s):
  • Gene hpd protein
  • Glycerophosphoryl diester phosphodiesterase
  • IgD-binding protein D

GO terms

Biochemical function:
Biological process:
Cellular component:
  • not assigned

Sequence family

Pfam Protein family (Pfam)
PF03009
Domain description: Glycerophosphoryl diester phosphodiesterase family
Occurring in:
  1. Glycerophosphodiester phosphodiesterase
The deposited structure of PDB entry 2pz0 contains 2 copies of Pfam domain PF03009 (Glycerophosphoryl diester phosphodiesterase family) in Glycerophosphodiester phosphodiesterase. Showing 1 copy in chain B.

InterPro InterPro annotations
IPR030395
Domain description: Glycerophosphodiester phosphodiesterase domain
Occurring in:
  1. Glycerophosphodiester phosphodiesterase
IPR017946
Domain description: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily
Occurring in:
  1. Glycerophosphodiester phosphodiesterase

Structure domain

CATH CATH domain
3.20.20.190
Class: Alpha Beta
Architecture: Alpha-Beta Barrel
Topology: TIM Barrel
Homology: Phosphatidylinositol (PI) phosphodiesterase
Occurring in:
  1. Glycerophosphodiester phosphodiesterase
The deposited structure of PDB entry 2pz0 contains 2 copies of CATH domain 3.20.20.190 (TIM Barrel) in Glycerophosphodiester phosphodiesterase. Showing 1 copy in chain B.

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