2pp7 Summary

pdbe.org/2pp7
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Crystal structure of anaerobically manipulated wild type oxidized AfNiR (acetate bound)

The structure was published by Tocheva, E.I., Eltis, L.D., and Murphy, M.E., in 2008 in a paper entitled "Conserved active site residues limit inhibition of a copper-containing nitrite reductase by small molecules." (abstract).

This crystal structure was determined using X-ray diffraction at a resolution of 1.65 Å and deposited in 2007.

The experimental data on which the structure is based was also deposited.

This PDB entry contains multiple copies of the structure of Copper-containing nitrite reductase.

It also contains one or more heterogenic compounds (e.g., ligands, co-factors, ions, modified amino acids, etc.); see here for a complete list.

The molecule most likely forms homotrimers.

The following tables show cross-reference information to other databases (to obtain a list of all PDB entries sharing the same property or classification, click on the magnifying glass icon):


Chain Name UniProt Name of source organism % of UniProt sequence present in the sample Residues in the sample molecules % of residues observed
A Copper-containing nitrite reductase P38501 (40-376) (NIR_ALCFA)search Alcaligenes faecalissearch 98% 341 98%
B Copper-containing nitrite reductase P38501 (40-376) (NIR_ALCFA)search Alcaligenes faecalissearch 98% 341 98%
C Copper-containing nitrite reductase P38501 (40-376) (NIR_ALCFA)search Alcaligenes faecalissearch 98% 341 98%


This entry contains 1 unique UniProt protein:

UniProt accession Name Organism PDB
P38501 (40 - 376) Copper-containing nitrite reductase Alcaligenes faecalis

Chain Structural classification (SCOP) Structural classification (CATH) Sequence family (Pfam)
A, B, C (P38501) Multidomain cupredoxinssearch Cupredoxins - blue copper proteinssearch PF00394: Multicopper oxidasesearch, PF07732: Multicopper oxidasesearch

Chain ID Biological process (GO) Molecular function (GO) Cellular component (GO)
A, B, C (P38501) nitrate assimilationsearch oxidation-reduction processsearch nitrogen compound metabolic processsearch denitrification pathwaysearch copper ion bindingsearch nitrite reductase (NO-forming) activitysearch metal ion bindingsearch oxidoreductase activitysearch periplasmic spacesearch

Chain InterPro annotation
A, B, C Multicopper oxidase, type 1search Nitrite reductase, copper-typesearch Cupredoxinsearch Multicopper oxidase, type 3search