2pha Summary


Crystal structure of native, unliganded human arginase at 1.90 resolution

The structure was published by Di Costanzo, L., Pique, M.E., and Christianson, D.W., in 2007 in a paper entitled "Crystal structure of human arginase I complexed with thiosemicarbazide reveals an unusual thiocarbonyl mu-sulfide ligand in the binuclear manganese cluster." (abstract).

This crystal structure was determined using X-ray diffraction at a resolution of 1.9 Å and deposited in 2007.

The experimental data on which the structure is based was also deposited.

This PDB entry contains multiple copies of the structure of Arginase-1.

It also contains one or more heterogenic compounds (e.g., ligands, co-factors, ions, modified amino acids, etc.); see here for a complete list.

The molecule has more than one probable quaternary state observed. For more details see the quaternary structure page.

The following tables show cross-reference information to other databases (to obtain a list of all PDB entries sharing the same property or classification, click on the magnifying glass icon):

Chain Name UniProt Name of source organism % of UniProt sequence present in the sample Residues in the sample molecules % of residues observed
A Arginase-1 P05089 (1-322) (ARGI1_HUMAN)search Homo sapienssearch 98% 322 97%
B Arginase-1 P05089 (1-322) (ARGI1_HUMAN)search Homo sapienssearch 98% 322 97%

This entry contains 1 unique UniProt protein:

UniProt accession Name Organism PDB
P05089 (1 - 322) Arginase-1 Homo sapiens

Chain Structural classification (SCOP) Structural classification (CATH) Sequence family (Pfam)
A, B (P05089) Arginase-like amidino hydrolasessearch Arginase; Chain Asearch PF00491: Arginase familysearch

Chain ID Biological process (GO) Molecular function (GO) Cellular component (GO)
A, B (P05089) urea cyclesearch liver developmentsearch positive regulation of endothelial cell proliferationsearch arginine metabolic processsearch arginine catabolic processsearch female pregnancysearch response to woundingsearch response to herbicidesearch response to manganese ionsearch response to zinc ionsearch response to selenium ionsearch regulation of L-arginine importsearch response to aminesearch lung developmentsearch response to lipopolysaccharidesearch collagen biosynthetic processsearch response to vitamin Asearch response to vitamin Esearch cellular nitrogen compound metabolic processsearch response to drugsearch response to amino acidsearch response to peptide hormonesearch small molecule metabolic processsearch response to cadmium ionsearch response to steroid hormonesearch response to axon injurysearch response to methylmercurysearch mammary gland involutionsearch maternal process involved in female pregnancysearch protein homotrimerizationsearch cellular response to hydrogen peroxidesearch cellular response to lipopolysaccharidesearch cellular response to interleukin-4search cellular response to glucagon stimulussearch cellular response to dexamethasone stimulussearch cellular response to transforming growth factor beta stimulussearch arginase activitysearch hydrolase activitysearch hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidinessearch manganese ion bindingsearch metal ion bindingsearch extracellular spacesearch nucleussearch cytoplasmsearch cytosolsearch neuron projectionsearch neuronal cell bodysearch extracellular vesicular exosomesearch

Chain InterPro annotation
A, B Ureohydrolasesearch Arginasesearch Ureohydrolase, manganese-binding sitesearch Ureohydrolase domainsearch