› 2oc5

X-ray diffraction
1.68Å resolution

Crystal structure of a ferritin-like protein (pmt1231) from prochlorococcus marinus str. mit 9313 at 1.68 A resolution

Released:
DOI: 10.2210/pdb2oc5/pdb
PDB entry 2oc5 coloured by chain, front view.
PDB entry 2oc5 coloured by chain, side view.
PDB entry 2oc5 coloured by chain, top view.
Source organism: Prochlorococcus marinus str. MIT 9313
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Reaction catalysed: 
A long-chain aldehyde + O(2) + 2 NADPH = an alkane + formate + H(2)O + 2 NADP(+)
Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-182056 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Aldehyde decarbonylase Chain: A
Molecule details ›
Chain: A
Length: 244 amino acids
Theoretical weight: 27.64 KDa
Source organism: Prochlorococcus marinus str. MIT 9313
Expression system: Escherichia coli
UniProt:
  • Canonical: Q7V6D4 (Residues: 1-243; Coverage: 100%)
Gene name: PMT_1231
Sequence domains: Long-chain fatty aldehyde decarbonylase
Structure domains: Ferritin

Ligands and Environments

3 bound ligands:
Ligand FE 2 x FE
Ligand ACT 1 x ACT
Ligand UNL 1 x UNL
1 modified residue:
Ligand MSE 8 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL9-2
Spacegroup: P43212
Unit cell:
a: 77.35Å b: 77.35Å c: 116.89Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.166 0.164 0.2
Expression system: Escherichia coli

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