spacer
EBI PDBe PDBeView

PDBe Entry: 2jim view

A NEW CATALYTIC MECHANISM OF PERIPLASMIC NITRATE REDUCTASE FROM DESULFOVIBRIO DESULFURICANS ATCC 27774 FROM CRYSTALLOGRAPHIC AND EPR DATA AND BASED ON DETAILED ANALYSIS OF THE SIXTH LIGAND
Summary
Header OXIDOREDUCTASEsearch
Method X-RAY DIFFRACTION
Experiment Resolution: 2.45 Å, R-factor: 18.1%, Free R-factor: 25.2%, Spacegroup: P 31 2 1
Released 18/03/2008, deposition: 28/06/2007, last revision: 24/02/2009
Authors Najmudin, S.search; Gonzalez, P.J.search; Trincao, J.search; Coelho, C.search; Mukhopadhyay, A.search; Romao, C.C.search; Moura, I.search; Moura, J.J.G.search; Brondino, C.D.search; Romao, M.J.search
Primary citation Periplasmic Nitrate Reductase Revisited: A Sulfur Atom Completes the Sixth Coordination of the Catalytic Molybdenum.
J.BIOL.INORG.CHEM.search vol:13, pag:737 (2008) [PubMed ID 18327621 ]search
Keywords NITRATE ASSIMILATIONsearch, NITROGENOUS ACCEPTORsearch, IRONsearch, 4FE-4Ssearch, TRANSPORTsearch, MOLYBDENUMsearch, PERIPLASMICsearch, DISULFIDE BONDsearch, ELECTRON TRANSPORTsearch, IRON-SULFURsearch, IRON- SULFURsearch, METAL-BINDINGsearch, DISSIMILATORY NITRATE REDUCTASEsearch, MOLYBDOPTERIN COFACTORsearch, SULFIDO LIGANDsearch, 4FE-4S CLUSTERsearch, OXIDOREDUCTASEsearch, ELECTRON PARAMAGNETIC RESONANCEsearch
EC 1.7.99.4 ExPASy BRENDA search (A)
Organism Desulfovibrio desulfuricans 876search(A)
UniProt Periplasmic nitrate reductase precursor (EC 1.7.99.4) P81186search (A)
Solvent A
Related entries 2nap, 2v3v, 2jiq, 2jio, 2jir, 2v45, 2jip
Polymers
Id Name Type UniProt Residues Observed
A PERIPLASMIC NITRATE REDUCTASE Protein P81186 (NAPA_DESDA)search
 723 99%
Heterogens
Id Name Ligands
A IRON/SULFUR CLUSTER SF4 search
A MOLYBDENUM ATOM MO search
A 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE MGD search
A UNKNOWN ATOM OR ION UNX search
spacer