2jd5 Summary

pdbe.org/2jd5
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SKY1P BOUND TO NPL3P-DERIVED SUBSTRATE PEPTIDE

The structure was published by Lukasiewicz, R., Nolen, B., Adams, J.A., and Ghosh, G., in 2007 in a paper entitled "The Rgg Domain of Npl3P Recruits Sky1P Through Docking Interactions" (abstract).

This crystal structure was determined using X-ray diffraction at a resolution of 2.5 Å and deposited in 2007.

The experimental data on which the structure is based was also deposited.

This PDB entry contains a complex of 2 biomacromolecules, namely SERINE/THREONINE-PROTEIN KINASE SKY1 and NPL3P.

It also contains one or more heterogenic compounds (e.g., ligands, co-factors, ions, modified amino acids, etc.); see here for a complete list.

The molecule most likely forms heterotrimers.

The following tables show cross-reference information to other databases (to obtain a list of all PDB entries sharing the same property or classification, click on the magnifying glass icon):


Chain Name UniProt Name of source organism % of UniProt sequence present in the sample Residues in the sample molecules % of residues observed
A SERINE/THREONINE-PROTEIN KINASE SKY1 Q03656 (138-742) (SKY1_YEAST)search Saccharomyces cerevisiae S288csearch < 90% 373 96%
B SERINE/THREONINE-PROTEIN KINASE SKY1 Q03656 (138-742) (SKY1_YEAST)search Saccharomyces cerevisiae S288csearch < 90% 373 96%
C NPL3P Not available
Not available Not available 7 71%


This entry contains 1 unique UniProt protein:

UniProt accession Name Organism PDB
Q03656 (138 - 742) SERINE/THREONINE-PROTEIN KINASE SKY1 Saccharomyces cerevisiae

Chain Structural classification (CATH) Sequence family (Pfam)
A, B Phosphorylase Kinase; domain 1search, Transferase(Phosphotransferase) domain 1search Protein kinase domainsearch
C

Chain ID Molecular function (GO) Biological process (GO)
A, B (Q03656) ATP bindingsearch protein kinase activitysearch protein serine/threonine kinase activitysearch transferase activity, transferring phosphorus-containing groupssearch protein phosphorylationsearch

Chain InterPro annotation
A, B Protein kinase domainsearch Serine/threonine/dual specificity protein kinase, catalytic domainsearch Serine/threonine-protein kinase, active sitesearch Protein kinase-like domainsearch Protein kinase, ATP binding sitesearch
C