› 2jav

X-ray diffraction
2.2Å resolution

Human Kinase with pyrrole-indolinone ligand

Released:
DOI: 10.2210/pdb2jav/pdb
PDB entry 2jav coloured by chain, front view.
PDB entry 2jav coloured by chain, side view.
PDB entry 2jav coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Structure and regulation of the human Nek2 centrosomal kinase.
Rellos P, Ivins FJ, Baxter JE, Pike A, Nott TJ, Parkinson DM, Das S, Howell S, Fedorov O, Shen QY, Fry AM, Knapp S, Smerdon SJ
J Biol Chem 282 6833-42 (2007)
PMID: 17197699

Function and Biology Details

Reaction catalysed: 
ATP + a protein = ADP + a phosphoprotein
Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-156438 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Serine/threonine-protein kinase Nek2 Chain: A
Molecule details ›
Chain: A
Length: 279 amino acids
Theoretical weight: 32.63 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P51955 (Residues: 1-271; Coverage: 61%)
Gene names: NEK2, NEK2A, NLK1
Sequence domains: Protein kinase domain
Structure domains:

Ligands and Environments

1 bound ligand:
Ligand 5Z5 1 x 5Z5
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X10SA
Spacegroup: P21
Unit cell:
a: 41.634Å b: 56.924Å c: 66.012Å
α: 90° β: 95.98° γ: 90°
R-values:
R R work R free
0.217 0.214 0.277
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

20 review citations

Cell cycle regulation by the NEK family of protein kinases.
Fry et al. (2012)
19 more

10 mentions without citation

Developing irreversible inhibitors of the protein kinase cysteinome.
Liu et al. (2013)
9 more