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PDBe Entry: 2dys view

Bovine heart cytochrome C oxidase modified by DCCD
Summary
Header OXIDOREDUCTASEsearch
Method X-RAY DIFFRACTION
Experiment Resolution: 2.2 Å, R-factor: 19.7%, Free R-factor: 24.2%, Spacegroup: P 21 21 21
Released 03/04/2007, deposition: 16/09/2006, last revision: 24/02/2009
Authors Shinzawa-Itoh, K.search; Aoyama, H.search; Muramoto, K.search; Kurauchi, T.search; Mizushima, T.search; Yamashita, E.search; Tsukihara, T.search; Yoshikawa, S.search
Primary citation Structures and physiological roles of 13 integral lipids of bovine heart cytochrome c oxidase
EMBO J.search vol:26, pag:1713-1725 (2007) [PubMed ID 17332748 ]search
Keywords oxidoreductasesearch
EC 1.9.3.1 ExPASy BRENDA search (A N)
Organism Bos taurus(cattle) 9913search(A N B O C P D Q E R F S G T H U I V J W K X L Y M Z)
UniProt Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide I) P00396search (A N)
Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide II) P68530search (B O)
Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide III) P00415search (C P)
Cytochrome c oxidase subunit 4 isoform 1, mitochondrial precursor (Cytochrome c oxidase subunit IV isoform 1) (COX IV-1) (Cytochrome c oxidase polypeptide IV) P00423search (D Q)
Cytochrome c oxidase subunit 5A, mitochondrial precursor (Cytochrome c oxidase polypeptide Va) P00426search (E R)
Cytochrome c oxidase subunit 5B, mitochondrial precursor (Cytochrome c oxidase polypeptide Vb) (Cytochrome c oxidase polypeptide VIa) P00428search (F S)
Cytochrome c oxidase polypeptide VIa-heart, mitochondrial precursor (COXVIAH) (Polypeptide VIb) P07471search (G T)
Cytochrome c oxidase subunit VIb isoform 1 (COX VIb-1) (Cytochrome c oxidase polypeptide VII) (Cytochrome c oxidase subunit AED) P00429search (H U)
Cytochrome c oxidase polypeptide VIc (STA) P04038search (I V)
Cytochrome c oxidase polypeptide VIIa-heart, mitochondrial precursor (Cytochrome c oxidase subunit VIIa-H) (COX VIIa-M) (VIIIC) P07470search (J W)
Cytochrome c oxidase polypeptide VIIb, mitochondrial precursor (IHQ) P13183search (K X)
Cytochrome c oxidase subunit 7C, mitochondrial precursor (Cytochrome c oxidase polypeptide VIIc) (Cytochrome c oxidase polypeptide VIIIA) P00430search (L Y)
Cytochrome c oxidase polypeptide VIII-heart, mitochondrial precursor (Cytochrome c oxidase subunit 8-1) (VIIIb) (IX) P10175search (M Z)
Solvent A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z
Related entries 1v54, 1v55, 2occ, 1ocr, 1oco, 1ocz, 1occ, 2dyr
Polymers
Id Name Type UniProt Residues Observed
A, N Cytochrome c oxidase subunit 1 Protein P00396 (COX1_BOVIN)search
514 100%
B, O Cytochrome c oxidase subunit 2 Protein P68530 (COX2_BOVIN)search
227 100%
C, P Cytochrome c oxidase subunit 3 Protein P00415 (COX3_BOVIN)search
261 99%
D, Q Cytochrome c oxidase subunit 4 isoform 1 Protein P00423 (COX41_BOVIN)search
147 97%
E, R Cytochrome c oxidase polypeptide Va Protein P00426 (COX5A_BOVIN)search
109 96%
F, S Cytochrome c oxidase polypeptide Vb Protein P00428 (COX5B_BOVIN)search
98 100%
G, T Cytochrome c oxidase polypeptide VIa-heart Protein P07471 (CX6A2_BOVIN)search
85 98%
H, U Cytochrome c oxidase subunit VIb isoform 1 Protein P00429 (CX6B1_BOVIN)search
85 92%
I, V Cytochrome c oxidase polypeptide VIc Protein P04038 (COX6C_BOVIN)search
73 100%
J, W Cytochrome c oxidase polypeptide VIIa-heart Protein P07470 (CX7A1_BOVIN)search
59 98%
K, X Cytochrome c oxidase polypeptide VIIb Protein P13183 (COX7B_BOVIN)search
56 87%
L, Y Cytochrome c oxidase polypeptide VIIc Protein P00430 (COX7C_BOVIN)search
47 97%
M, Z Cytochrome c oxidase polypeptide VIII-heart Protein P10175 (COX8B_BOVIN)search
46 93%
Heterogens
Id Name Ligands
A, N COPPER (II) ION CU search
A, N MAGNESIUM ION MG search
A, N SODIUM ION NA search
A, N HEME-A HEA search
A, C, N, P (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE PGV search
B, O DINUCLEAR COPPER ION CUA search
B, D, L, N, O TRISTEAROYLGLYCEROL TGL search
B, O (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE PSC search
B, C, J, O, P, W CHOLIC ACID CHD search
C, M, P, Z SUGAR (DECYL-BETA-D-MALTOPYRANOSIDE) DMU search
C, P UNKNOWN ATOM OR ION UNX search
C, G, P, T (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE PEK search
C, G, P, T CARDIOLIPIN CDL search
F, S ZINC ION ZN search
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