› 2dyi

X-ray diffraction
2Å resolution

Crystal structure of 16S ribosomal RNA processing protein RimM from Thermus thermophilus HB8

Released:
DOI: 10.2210/pdb2dyi/pdb
PDB entry 2dyi coloured by chain, front view.
PDB entry 2dyi coloured by chain, side view.
PDB entry 2dyi coloured by chain, top view.
Source organism: Thermus thermophilus HB8
Entry authors: Kawazoe M, Takemoto C, Kaminishi T, Tatsuguchi A, Shirouzu M, Yokoyama S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-178020 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Ribosome maturation factor RimM Chain: A
Molecule details ›
Chain: A
Length: 162 amino acids
Theoretical weight: 18.09 KDa
Source organism: Thermus thermophilus HB8
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q5SJH5 (Residues: 1-162; Coverage: 100%)
Gene names: TTHA1033, rimM
Sequence domains:
Structure domains:

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PHOTON FACTORY BEAMLINE AR-NW12A
Spacegroup: P212121
Unit cell:
a: 51.328Å b: 53.103Å c: 70.437Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.192 0.192 0.256
Expression system: Escherichia coli BL21(DE3)

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