2dkv Summary

pdbe.org/2dkv
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Crystal structure of class I chitinase from Oryza sativa L. japonica

The structure was published by Kezuka, Y., Kojima, M., Mizuno, R., Suzuki, K., Watanabe, T., and Nonaka, T., in 2010 in a paper entitled "Structure of full-length class I chitinase from rice revealed by X-ray crystallography and small-angle X-ray scattering" (abstract).

This crystal structure was determined using X-ray diffraction at a resolution of 2.0 Å and deposited in 2006.

The experimental data on which the structure is based was also deposited.

The PDB entry contains the structure of chitinase.

It also contains one or more heterogenic compounds (e.g., ligands, co-factors, ions, modified amino acids, etc.); see here for a complete list.

The molecule is most likely monomeric.

The following tables show cross-reference information to other databases (to obtain a list of all PDB entries sharing the same property or classification, click on the magnifying glass icon):


Chain Name UniProt Name of source organism % of UniProt sequence present in the sample Residues in the sample molecules % of residues observed
A chitinase Q7DNA1 (33-340) (CHI2_ORYSJ)search Oryza sativa Japonica Groupsearch 100% 309 92%


This entry contains 1 unique UniProt protein:

UniProt accession Name Organism PDB
Q7DNA1 (33 - 340) chitinase Oryza sativa Japonica Group

Chain Structural classification (CATH) Sequence family (Pfam)
A (Q7DNA1) Wheat Germ Agglutinin (Isolectin 2); domain 1search, Lysozymesearch, Endochitinase, domain 2search PF00182: Chitinase class Isearch, PF00187: Chitin recognition proteinsearch

Chain ID Biological process (GO) Molecular function (GO)
A (Q7DNA1) cell wall macromolecule catabolic processsearch carbohydrate metabolic processsearch metabolic processsearch chitin catabolic processsearch defense response to fungussearch defense responsesearch polysaccharide catabolic processsearch chitinase activitysearch hydrolase activity, acting on glycosyl bondssearch hydrolase activitysearch chitin bindingsearch

Chain InterPro annotation
A Glycoside hydrolase, family 19, catalyticsearch Chitin-binding, type 1search Glycoside hydrolase, family 19search Chitin-binding, type 1, conserved sitesearch Lysozyme-like domainsearch