2dg3 Summary

pdbe.org/2dg3
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Wildtype FK506-binding protein complexed with Rapamycin

The structure was published by Fulton, K.F., Jackson, S.E., and Buckle, A.M., in 2003 in a paper entitled "Energetic and structural analysis of the role of tryptophan 59 in FKBP12" (abstract).

This crystal structure was determined using X-ray diffraction at a resolution of 1.7 Å and deposited in 2006.

The experimental data on which the structure is based was also deposited.

The PDB entry contains the structure of FK506-binding protein 1A. This molecule has the UniProt identifier P62942 (FKB1A_HUMAN)search. The sample contained 107 residues which is 99% of the natural sequence. Out of 107 residues 104 were observed and are deposited in the PDB.

It also contains one or more heterogenic compounds (e.g., ligands, co-factors, ions, modified amino acids, etc.); see here for a complete list.

The molecule is most likely monomeric.

The following tables show cross-reference information to other databases (to obtain a list of all PDB entries sharing the same property or classification, click on the magnifying glass icon):


Chain Name UniProt Name of source organism % of UniProt sequence present in the sample Residues in the sample molecules % of residues observed
A FK506-binding protein 1A P62942 (2-108) (FKB1A_HUMAN)search Homo sapienssearch 99% 107 100%


This entry contains 1 unique UniProt protein:

UniProt accession Name Organism PDB
P62942 (2 - 108) FK506-binding protein 1A Homo sapiens

Chain Structural classification (SCOP) Structural classification (CATH) Sequence family (Pfam)
A (P62942) FKBP immunophilin/proline isomerasesearch Chitinase A; domain 3search PF00254: FKBP-type peptidyl-prolyl cis-trans isomerasesearch

Chain ID Biological process (GO) Cellular component (GO) Molecular function (GO)
A (P62942) regulation of ryanodine-sensitive calcium-release channel activitysearch heart trabecula formationsearch regulation of immune responsesearch ventricular cardiac muscle tissue morphogenesissearch chaperone-mediated protein foldingsearch amyloid fibril formationsearch regulation of amyloid precursor protein catabolic processsearch positive regulation of I-kappaB kinase/NF-kappaB signalingsearch positive regulation of protein bindingsearch negative regulation of ryanodine-sensitive calcium-release channel activitysearch calcium ion transmembrane transportsearch protein foldingsearch T cell activationsearch protein maturation by protein foldingsearch positive regulation of protein ubiquitinationsearch transforming growth factor beta receptor signaling pathwaysearch protein refoldingsearch negative regulation of protein phosphatase type 2B activitysearch protein peptidyl-prolyl isomerizationsearch extracellular fibril organizationsearch 'de novo' protein foldingsearch regulation of activin receptor signaling pathwaysearch negative regulation of release of sequestered calcium ion into cytosolsearch regulation of protein localizationsearch heart morphogenesissearch SMAD protein complex assemblysearch cytoplasmsearch cytosolsearch Z discsearch membranesearch endoplasmic reticulum membranesearch terminal cisternasearch extracellular vesicular exosomesearch protein bindingsearch peptidyl-prolyl cis-trans isomerase activitysearch activin bindingsearch calcium channel inhibitor activitysearch FK506 bindingsearch isomerase activitysearch signal transducer activitysearch transforming growth factor beta receptor bindingsearch type I transforming growth factor beta receptor bindingsearch ion channel bindingsearch macrolide bindingsearch transforming growth factor beta-activated receptor activitysearch ryanodine-sensitive calcium-release channel activitysearch SMAD bindingsearch

Chain InterPro annotation
A Peptidyl-prolyl cis-trans isomerase, FKBP-type, domainsearch Peptidyl-prolyl cis-trans isomerase, FKBP-typesearch