2d69 Summary

pdbe.org/2d69
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Crystal structure of the complex of sulfate ion and octameric ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) from Pyrococcus horikoshii OT3 (form-2 crystal)

A publication describing this structure is not available. The depositing authors are Mizohata, E.search; Mishima, C.search; Akasaka, R.search; Uda, H.search; Terada, T.search; Shirouzu, M.search; Yokoyama, S.search; RIKEN Structural Genomics/Proteomics Initiative (RSGI)search

This crystal structure was determined using X-ray diffraction at a resolution of 1.9 Å and deposited in 2005.

The experimental data on which the structure is based was also deposited.

This PDB entry contains multiple copies of the structure of Ribulose bisphosphate carboxylase.

It also contains one or more heterogenic compounds (e.g., ligands, co-factors, ions, modified amino acids, etc.); see here for a complete list.

The molecule has more than one probable quaternary state observed. For more details see the quaternary structure page.

The following tables show cross-reference information to other databases (to obtain a list of all PDB entries sharing the same property or classification, click on the magnifying glass icon):


Chain Name UniProt Name of source organism % of UniProt sequence present in the sample Residues in the sample molecules % of residues observed
A Ribulose bisphosphate carboxylase O58677 (1-430) (RBL_PYRHO)search Pyrococcus horikoshii OT3search 100% 430 98%
B Ribulose bisphosphate carboxylase O58677 (1-430) (RBL_PYRHO)search Pyrococcus horikoshii OT3search 100% 430 98%
D Ribulose bisphosphate carboxylase O58677 (1-430) (RBL_PYRHO)search Pyrococcus horikoshii OT3search 100% 430 98%
E Ribulose bisphosphate carboxylase O58677 (1-430) (RBL_PYRHO)search Pyrococcus horikoshii OT3search 100% 430 98%


This entry contains 1 unique UniProt protein:

UniProt accession Name Organism PDB
O58677 (1 - 430) Ribulose bisphosphate carboxylase Pyrococcus horikoshii OT3

Chain Structural classification (SCOP) Structural classification (CATH) Sequence family (Pfam)
A, B, D, E (O58677) RuBisCo, large subunit, C-terminal domainsearch, Ribulose 1,5-bisphosphate carboxylase-oxygenasesearch Alpha-Beta Plaitssearch, Rubiscosearch PF00016: Ribulose bisphosphate carboxylase large chain, catalytic domainsearch, PF02788: Ribulose bisphosphate carboxylase large chain, N-terminal domainsearch

Chain ID Biological process (GO) Molecular function (GO)
A, B, D, E (O58677) carbon fixationsearch AMP catabolic processsearch oxidation-reduction processsearch ribulose-bisphosphate carboxylase activitysearch magnesium ion bindingsearch metal ion bindingsearch oxidoreductase activitysearch lyase activitysearch

Chain InterPro annotation
A, B, D, E Ribulose bisphosphate carboxylase, large subunit, C-terminalsearch Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminalsearch Ribulose bisphosphate carboxylase, large subunit, N-terminalsearch Ribulose bisphosphate carboxylase, type IIIsearch