› 2cdp

X-ray diffraction
1.59Å resolution

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-179524 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (2 distinct):
Beta-agarase I Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 160 amino acids
Theoretical weight: 16.88 KDa
Source organism: Saccharophagus degradans 2-40
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q6DN99 (Residues: 451-593; Coverage: 24%)
Gene name: agaB
Sequence domains: Carbohydrate binding module (family 6)
Structure domains: Galactose-binding domain-like

Ligands and Environments

Carbohydrate polymer : NEW Components: GAL, AAL
Carbohydrate polymer
3 bound ligands:
Ligand CA 8 x CA
Ligand EDO 6 x EDO
Ligand CL 9 x CL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU MICROMAX-007
Spacegroup: P212121
Unit cell:
a: 53.72Å b: 54.996Å c: 195.908Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.212 0.21 0.253
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

9 review citations

Advances in understanding the molecular basis of plant cell wall polysaccharide recognition by carbohydrate-binding modules.
Gilbert et al. (2013)
8 more

5 mentions without citation

Structural insights into Bacillus thuringiensis Cry, Cyt and parasporin toxins.
Xu et al. (2014)
4 more