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PDBe Entry: 2b8k view

12-subunit RNA Polymerase II
Summary
Header Transferasesearch
Method X-RAY DIFFRACTION
Experiment Resolution: 4.15 Å, R-factor: 38.7%, Spacegroup: C 2 2 21
Released 20/06/2006, deposition: 07/10/2005, last revision: 24/02/2009
Authors Meyer, P.A.search; Ye, P.search; Zhang, M.search; Suh, M.H.search; Fu, J.search
Primary citation Phasing RNA Polymerase II Using Intrinsically Bound Zn Atoms: An Updated Structural Model.
STRUCTUREsearch vol:14, pag:973-982 (2006) [PubMed ID 16765890 ]search
Keywords DNA-DIRECTED RNA POLYMERASEsearch, DNA-DEPENDENT RNA POLYMERASEsearch, CELLULAR RNA POLYMERASEsearch, METAL-BINDINGsearch, NUCLEAR PROTEINsearch, TRANSCRIPTIONsearch, ZINCsearch, Transferasesearch
EC 2.7.7.6 ExPASy BRENDA search (A B)
Organism Saccharomyces cerevisiae(baker's yeast) 4932search(A B C D E F G H I J K L)
UniProt DNA-directed RNA polymerase II subunit RPB1 (EC 2.7.7.6) (RNA polymerase II subunit B1) (RNA polymerase II subunit 1) (DNA-directed RNA polymerase III largest subunit) (B220) P04050search (A)
DNA-directed RNA polymerase II subunit RPB2 (EC 2.7.7.6) (RNA polymerase II subunit 2) (DNA-directed RNA polymerase II 140 kDa polypeptide) (B150) P08518search (B)
DNA-directed RNA polymerase II subunit RPB3 (RNA polymerase II subunit B3) (RNA polymerase II subunit 3) (DNA-directed RNA polymerase II 45 kDa polypeptide) (B44.5) P16370search (C)
DNA-directed RNA polymerase II subunit RPB4 (RNA polymerase II subunit B4) (DNA-directed RNA polymerase II 32 kDa polypeptide) (B32) P20433search (D)
DNA-directed RNA polymerases I, II, and III subunit RPABC1 (RNA polymerases I, II, and III subunit ABC1) (DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide) (ABC27) P20434search (E)
DNA-directed RNA polymerases I, II, and III subunit RPABC2 (RNA polymerases I, II, and III subunit ABC2) (DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide) (ABC23) P20435search (F)
DNA-directed RNA polymerase II subunit RPB7 (RNA polymerase II subunit B7) (B16) P34087search (G)
DNA-directed RNA polymerases I, II, and III subunit RPABC3 (RNA polymerases I, II, and III subunit ABC3) (DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide) (ABC14.5) (ABC14.4) P20436search (H)
DNA-directed RNA polymerase II subunit RPB9 (RNA polymerase II subunit B9) (DNA-directed RNA polymerase II subunit 9) (DNA-directed RNA polymerase II 14.2 kDa polypeptide) (B12.6) P27999search (I)
DNA-directed RNA polymerases I, II, and III subunit RPABC5 (RNA polymerases I, II, and III subunit ABC5) (DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide) (ABC10-beta) (ABC8) P22139search (J)
DNA-directed RNA polymerase II subunit RPB11 (RNA polymerase II subunit B11) (DNA-directed RNA polymerase II 13.6 kDa polypeptide) (B13.6) P38902search (K)
DNA-directed RNA polymerases I, II, and III subunit RPABC4 (RNA polymerases I, II, and III subunit ABC4) (ABC10-alpha) P40422search (L)
Related entries 1wcm
Polymers
Id Name Type UniProt Residues Observed
A DNA-directed RNA polymerase II largest subunit Protein P04050 (RPB1_YEAST)search
1733 81%
B DNA-directed RNA polymerase II 140 kDa polypeptide Protein P08518 (RPB2_YEAST)search
1224 91%
C DNA-directed RNA polymerase II 45 kDa polypeptide Protein P16370 (RPB3_YEAST)search
318 83%
D DNA-directed RNA polymerase II 32 kDa polypeptide Protein P20433 (RPB4_YEAST)search
221 82%
E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide Protein P20434 (RPAB1_YEAST)search
215 99%
F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide Protein P20435 (RPAB2_YEAST)search
155 54%
G DNA-directed RNA polymerase II 19 kDa polypeptide Protein P34087 (RPB7_YEAST)search
215 79%
H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide Protein P20436 (RPAB3_YEAST)search
146 91%
I DNA-directed RNA polymerase II subunit 9 Protein P27999 (RPB9_YEAST)search
122 97%
J DNA-directed RNA polymerases I/II/III subunit 10 Protein P22139 (RPAB5_YEAST)search
70 92%
K DNA-directed RNA polymerase II 13.6 kDa polypeptide Protein P38902 (RPB11_YEAST)search
120 95%
L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide Protein P40422 (RPAB4_YEAST)search
70 65%
Heterogens
Id Name Ligands
A, B, C, I, J, L ZINC ION ZN search
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