› 2yyt

X-ray diffraction
2.3Å resolution

Crystal structure of uncharacterized conserved protein from Geobacillus kaustophilus

Released:
DOI: 10.2210/pdb2yyt/pdb
PDB entry 2yyt coloured by chain, front view.
PDB entry 2yyt coloured by chain, side view.
PDB entry 2yyt coloured by chain, top view.
Source organism: Geobacillus kaustophilus HTA426
Entry authors: Kanagawa M, Baba S, Nakamura Y, Bessho Y, Kuramitsu S, Yokoyama S, Kawai G, Sampei G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Function and Biology Details

Reaction catalysed: 
Orotidine 5'-phosphate = UMP + CO(2)
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-177404 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Orotidine 5'-phosphate decarboxylase Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 246 amino acids
Theoretical weight: 26.98 KDa
Source organism: Geobacillus kaustophilus HTA426
Expression system: Escherichia coli
UniProt:
  • Canonical: Q5L0U0 (Residues: 1-244; Coverage: 100%)
Gene names: GK1155, pyrF
Sequence domains: Orotidine 5'-phosphate decarboxylase / HUMPS family
Structure domains: Aldolase class I

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL26B2
Spacegroup: P1
Unit cell:
a: 47.213Å b: 58.86Å c: 88.135Å
α: 100.74° β: 96.56° γ: 107.44°
R-values:
R R work R free
0.229 0.229 0.289
Expression system: Escherichia coli

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