› 2q6w

X-ray diffraction
2.25Å resolution

The structure of HLA-DRA, DRB3*0101 (DR52a) with bound platelet integrin peptide associated with fetal and neonatal alloimmune thrombocytopenia

Released:
DOI: 10.2210/pdb2q6w/pdb
PDB entry 2q6w coloured by chain, front view.
PDB entry 2q6w coloured by chain, side view.
PDB entry 2q6w coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Crystallographic structure of the human leukocyte antigen DRA, DRB3*0101: models of a directional alloimmune response and autoimmunity.
Parry CS, Gorski J, Stern LJ
J Mol Biol 371 435-46 (2007)
PMID: 17583734

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
PDBe Complex ID:
PDB-CPX-135352 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
HLA class II histocompatibility antigen, DR alpha chain Chains: A, D
Molecule details ›
Chains: A, D
Length: 182 amino acids
Theoretical weight: 21.16 KDa
Source organism: Homo sapiens
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: P01903 (Residues: 26-207; Coverage: 80%)
Gene names: HLA-DRA, HLA-DRA1
Sequence domains:
Structure domains:
HLA class II histocompatibility antigen, DR beta 3 chain Chains: B, E
Molecule details ›
Chains: B, E
Length: 190 amino acids
Theoretical weight: 22.1 KDa
Source organism: Homo sapiens
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: P79483 (Residues: 30-219; Coverage: 80%)
Gene name: HLA-DRB3
Sequence domains:
Structure domains:
Integrin beta-3 Chains: C, F
Molecule details ›
Chains: C, F
Length: 12 amino acids
Theoretical weight: 1.3 KDa
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: P05106 (Residues: 50-61; Coverage: 2%)
Gene names: GP3A, ITGB3

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X25
Spacegroup: P41212
Unit cell:
a: 92.169Å b: 92.169Å c: 248.555Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.214 0.21 0.265
Expression systems:
  • Spodoptera frugiperda
  • Not provided

Quick links

Citations

3 review citations

HLA-DR: molecular insights and vaccine design.
Stern et al. (2009)
2 more

47 mentions without citation

Conformational variation in structures of classical and non-classical MHCII proteins and functional implications.
Painter et al. (2012)
46 more