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Solution NMR

Solution NMR Structure of apo YdbC from Lactococcus lactis, Northeast Structural Genomics Consortium (NESG) Target KR150

Released:
DOI: 10.2210/pdb2ltd/pdb
PDB entry 2ltd coloured by chain, ensemble of 20 models, front view.
PDB entry 2ltd coloured by chain, ensemble of 20 models, side view.
PDB entry 2ltd coloured by chain, ensemble of 20 models, top view.
Source organism: Lactococcus lactis subsp. lactis Il1403
Primary publication:
Structures of apo- and ssDNA-bound YdbC from Lactococcus lactis uncover the function of protein domain family DUF2128 and expand the single-stranded DNA-binding domain proteome.
Rossi P, Barbieri CM, Aramini JM, Bini E, Lee HW, Janjua H, Xiao R, Acton TB, Montelione GT
Nucleic Acids Res 41 2756-68 (2013)
PMID: 23303792

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-189972 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Transcriptional coactivator p15 (PC4) C-terminal domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 80 amino acids
Theoretical weight: 9.49 KDa
Source organism: Lactococcus lactis subsp. lactis Il1403
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q9CIP3 (Residues: 1-72; Coverage: 100%)
Gene names: L114363, ydbC
Sequence domains: Transcriptional Coactivator p15 (PC4)

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Chemical shift assignment: 46%
Refinement method: molecular dynamics
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

6 citation in other articles

Structural insights into the unique single-stranded DNA-binding mode of Helicobacter pylori DprA.
Wang et al. (2014)
5 more

5 mentions without citation

Integrative Protein Modeling in RosettaNMR from Sparse Paramagnetic Restraints.
Kuenze et al. (2019)
4 more