2fvv

X-ray diffraction
1.25Å resolution

Human Diphosphoinositol polyphosphate phosphohydrolase 1

Released:

Function and Biology Details

Reactions catalysed:
Polyphosphate + n H(2)O = (n+1) oligophosphate
Diphospho-myo-inositol polyphosphate + H(2)O = myo-inositol polyphosphate + phosphate
A 5'-(N(7)-methyl 5'-triphosphoguanosine)-[mRNA] + H(2)O = N(7)-methylguanosine 5'-phosphate + a 5'-diphospho-[mRNA]
P(1),P(4)-bis(5'-adenosyl)tetraphosphate + H(2)O = ATP + AMP
5'-(N(7)-methylguanosine 5'-triphospho)-[mRNA] + H(2)O = N(7)-methylguanosine 5'-diphosphate + 5'-phospho-[mRNA]

Structure analysis Details

Assembly composition:
monomeric (preferred)
PDBe Complex ID:
PDB-CPX-132098 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Diphosphoinositol polyphosphate phosphohydrolase 1 Chain: A
Molecule details ›
Chain: A
Length: 194 amino acids
Theoretical weight: 22.06 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: O95989 (Residues: 1-172; Coverage: 100%)
Gene names: DIPP, DIPP1, NUDT3
Sequence domains: NUDIX domain
Structure domains: Nucleoside Triphosphate Pyrophosphohydrolase

Ligands and Environments

3 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: BRUKER AXS MICROSTAR, MAX II BEAMLINE I911-5
Spacegroup: P212121
Unit cell:
a: 48.653Å b: 59.9Å c: 61.735Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.173 0.171 0.222
Expression system: Escherichia coli BL21(DE3)