› 2f07

X-ray diffraction
2.3Å resolution

Crystal Structure of YvdT from Bacillus subtilis

Released:
DOI: 10.2210/pdb2f07/pdb
PDB entry 2f07 coloured by chain, front view.
PDB entry 2f07 coloured by chain, side view.
PDB entry 2f07 coloured by chain, top view.
Source organism: Bacillus subtilis subsp. subtilis str. 168
Entry authors: Su X-D, Yu Y-M, Nan J

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-126556 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Uncharacterized HTH-type transcriptional regulator YvdT Chains: A, B
Molecule details ›
Chains: A, B
Length: 197 amino acids
Theoretical weight: 22.6 KDa
Source organism: Bacillus subtilis subsp. subtilis str. 168
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: O07001 (Residues: 1-194; Coverage: 100%)
Gene names: BSU34480, yvdT
Sequence domains:
Structure domains: Tetracycline Repressor, domain 2

Ligands and Environments

1 bound ligand:
Ligand BTB 2 x BTB
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: BSRF BEAMLINE 3W1A
Spacegroup: P65
Unit cell:
a: 115.608Å b: 115.608Å c: 97.032Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.241 0.234 0.255
Expression system: Escherichia coli BL21(DE3)

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