2e3x

X-ray diffraction
2.91Å resolution

Crystal structure of Russell's viper venom metalloproteinase

Released:

Function and Biology Details

Reaction catalysed:
Specifically activates several components of the blood clotting system, including coagulation factor X, coagulation factor IX and protein C by cleavage of -Arg-|- bonds. Has no action on insulin B chain.
Biochemical function:
Cellular component:

Structure analysis Details

Assembly composition:
hetero trimer (preferred)
PDBe Complex ID:
PDB-CPX-175657 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (5 distinct):
Coagulation factor X-activating enzyme heavy chain Chain: A
Molecule details ›
Chain: A
Length: 427 amino acids
Theoretical weight: 47.7 KDa
Source organism: Daboia siamensis
UniProt:
  • Canonical: Q7LZ61 (Residues: 189-615; Coverage: 71%)
Sequence domains:
Structure domains: Collagenase (Catalytic Domain)
Snaclec coagulation factor X-activating enzyme light chain 2 Chain: B
Molecule details ›
Chain: B
Length: 134 amino acids
Theoretical weight: 15.96 KDa
Source organism: Daboia siamensis
UniProt:
  • Canonical: Q4PRD2 (Residues: 25-158; Coverage: 100%)
Gene name: LC2
Sequence domains: Lectin C-type domain
Structure domains: Mannose-Binding Protein A, subunit A
Snaclec coagulation factor X-activating enzyme light chain 1 Chain: C
Molecule details ›
Chain: C
Length: 122 amino acids
Theoretical weight: 14.36 KDa
Source organism: Daboia siamensis
UniProt:
  • Canonical: Q4PRD1 (Residues: 25-146; Coverage: 99%)
Gene name: LC1
Sequence domains: Lectin C-type domain
Structure domains: Mannose-Binding Protein A, subunit A

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer : NEW Components: NAG, MAN
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL41XU
Spacegroup: P212121
Unit cell:
a: 70.35Å b: 91.73Å c: 152.93Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.218 0.218 0.273