› 2bwf

X-ray diffraction
1.15Å resolution

Crystal structure of the UBL domain of Dsk2 from S. cerevisiae

Released:
DOI: 10.2210/pdb2bwf/pdb
PDB entry 2bwf coloured by chain, front view.
PDB entry 2bwf coloured by chain, side view.
PDB entry 2bwf coloured by chain, top view.
Source organism: Saccharomyces cerevisiae
Primary publication:
Structures of the Dsk2 UBL and UBA domains and their complex.
Lowe ED, Hasan N, Trempe JF, Fonso L, Noble ME, Endicott JA, Johnson LN, Brown NR
Acta Crystallogr D Biol Crystallogr 62 177-88 (2006)
PMID: 16421449

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-155743 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Ubiquitin domain-containing protein DSK2 Chains: A, B
Molecule details ›
Chains: A, B
Length: 77 amino acids
Theoretical weight: 8.63 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli
UniProt:
  • Canonical: P48510 (Residues: 1-75; Coverage: 20%)
Gene names: DSK2, SHE4, YM8021.02, YMR276W
Sequence domains: Ubiquitin family
Structure domains: Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1

Ligands and Environments

1 bound ligand:
Ligand FMT 2 x FMT
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID14-1
Spacegroup: P212121
Unit cell:
a: 49.415Å b: 49.587Å c: 58.771Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.185 0.184 0.195
Expression system: Escherichia coli

Quick links

Citations

8 review citations

Ubiquitin-binding domains.
Hurley et al. (2006)
7 more

18 mentions without citation

The natural history of ubiquitin and ubiquitin-related domains.
Burroughs et al. (2012)
17 more