› 2a33

X-ray diffraction
1.95Å resolution

X-Ray Structure of a Lysine Decarboxylase-Like Protein from Arabidopsis Thaliana Gene AT2G37210

Released:
DOI: 10.2210/pdb2a33/pdb
PDB entry 2a33 coloured by chain, front view.
PDB entry 2a33 coloured by chain, side view.
PDB entry 2a33 coloured by chain, top view.
Source organism: Arabidopsis thaliana
Primary publication:
X-ray crystal structures of the conserved hypothetical proteins from Arabidopsis thaliana gene loci At5g11950 and AT2g37210.
Jeon WB, Allard ST, Bingman CA, Bitto E, Han BW, Wesenberg GE, Phillips GN
Proteins 65 1051-4 (2006)
PMID: 17048257

Function and Biology Details

Reaction catalysed: 
N(6)-(Delta(2)-isopentenyl)-adenosine 5'-phosphate + H(2)O = N(6)-(dimethylallyl)adenine + D-ribose 5'-phosphate
Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-185266 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 Chains: A, B
Molecule details ›
Chains: A, B
Length: 215 amino acids
Theoretical weight: 23.92 KDa
Source organism: Arabidopsis thaliana
Expression system: Escherichia coli
UniProt:
  • Canonical: Q8L8B8 (Residues: 1-215; Coverage: 100%)
Gene names: At2g37210, LOG3, T2N18.3
Sequence domains: Possible lysine decarboxylase
Structure domains: Rossmann fold

Ligands and Environments

2 bound ligands:
Ligand SO4 2 x SO4
Ligand MG 1 x MG
1 modified residue:
Ligand MSE 14 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 22-BM
Spacegroup: P212121
Unit cell:
a: 53.403Å b: 66.773Å c: 98.639Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.183 0.181 0.234
Expression system: Escherichia coli

Quick links

Citations

4 review citations

The mononuclear molybdenum enzymes.
Hille et al. (2014)
3 more

6 mentions without citation

Clinical and translational values of spatial transcriptomics.
Zhang et al. (2022)
5 more