› 211d

X-ray diffraction
1.6Å resolution

THE CRYSTAL AND MOLECULAR STRUCTURE OF A NEW Z-DNA CRYSTAL FORM: D[CGT(2-NH2-A) CG] AND ITS PLATINATED DERIVATIVE

Released:
DOI: 10.2210/pdb211d/pdb
PDB entry 211d coloured by chain, front view.
PDB entry 211d coloured by chain, side view.
PDB entry 211d coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Crystal and molecular structure of a new Z-DNA crystal form: d[CGT(2-NH2-A)CG] and its platinated derivative.
Parkinson GN, Arvanitis GM, Lessinger L, Ginell SL, Jones R, Gaffney B, Berman HM
Biochemistry 34 15487-95 (1995)
PMID: 7492550

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-114980 (preferred)
Entry contents:
1 distinct DNA molecule
Macromolecule:
DNA (5'-D(*CP*GP*TP*(1AP)P*CP*(PT(NH3)3)G)-3') Chain: A
Molecule details ›
Chain: A
Length: 6 nucleotides
Theoretical weight: 1.82 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

2 bound ligands:
Ligand PTN 1 x PTN
Ligand SPM 1 x SPM
1 modified residue:
Ligand 1AP 1 x 1AP

Experiments and Validation Details

Entry percentile scores
X-ray source: ELLIOTT GX-21
Spacegroup: P3221
Unit cell:
a: 25.193Å b: 25.193Å c: 38.948Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.17 0.17 not available
Expression system: Not provided

Quick links

Citations

2 review citations

Nucleic acid crystallography: a view from the nucleic acid database.
Berman et al. (1996)
1 more

3 mentions without citation

DNA conformations and their sequence preferences.
Svozil et al. (2008)
2 more