1zio Summary



The structure was published by Berry, M.B. and Phillips Jr., G.N., in 1998 in a paper entitled "Crystal structures of Bacillus stearothermophilus adenylate kinase with bound Ap5A, Mg2+ Ap5A, and Mn2+ Ap5A reveal an intermediate lid position and six coordinate octahedral geometry for bound Mg2+ and Mn2+." (abstract).

This crystal structure was determined using X-ray diffraction at a resolution of 1.96 Å and deposited in 1996.

The experimental data on which the structure is based was not deposited.

The PDB entry contains the structure of ADENYLATE KINASE. This molecule has the UniProt identifier P27142 (KAD_GEOSE)search. The sample contained 217 residues which is 100% of the natural sequence. Out of 217 residues 217 were observed and are deposited in the PDB.

It also contains one or more heterogenic compounds (e.g., ligands, co-factors, ions, modified amino acids, etc.); see here for a complete list.

The molecule is most likely monomeric.

The following tables show cross-reference information to other databases (to obtain a list of all PDB entries sharing the same property or classification, click on the magnifying glass icon):

Chain Name UniProt Name of source organism % of UniProt sequence present in the sample Residues in the sample molecules % of residues observed
A ADENYLATE KINASE P27142 (1-217) (KAD_GEOSE)search Geobacillus stearothermophilussearch 99% 217 100%

This entry contains 1 unique UniProt protein:

UniProt accession Name Organism PDB
P27142 (1 - 217) ADENYLATE KINASE Geobacillus stearothermophilus

Chain Structural classification (SCOP) Structural classification (CATH) Sequence family (Pfam)
A (P27142) Nucleotide and nucleoside kinasessearch, Microbial and mitochondrial ADK, insert "zinc finger" domainsearch P-loop containing nucleotide triphosphate hydrolasessearch PF00406: Adenylate kinasesearch

Chain ID Molecular function (GO) Biological process (GO) Cellular component (GO)
A (P27142) adenylate kinase activitysearch transferase activitysearch nucleotide bindingsearch kinase activitysearch nucleobase-containing compound kinase activitysearch ATP bindingsearch phosphotransferase activity, phosphate group as acceptorsearch metal ion bindingsearch nucleotide phosphorylationsearch AMP salvagesearch phosphorylationsearch nucleotide biosynthetic processsearch nucleobase-containing compound metabolic processsearch cytoplasmsearch

Chain InterPro annotation
A Adenylate kinase/UMP-CMP kinasesearch Adenylate kinase subfamilysearch Adenylate kinase, active site lid domainsearch P-loop containing nucleoside triphosphate hydrolasesearch