› 1yxn

Electron Microscopy
7.9Å resolution

Pseudo-atomic model of a fiberless isometric variant of bacteriophage phi29

Released:
DOI: 10.2210/pdb1yxn/pdb
PDB entry 1yxn coloured by chain, front view.
PDB entry 1yxn coloured by chain, side view.
PDB entry 1yxn coloured by chain, top view.
Source organism: Bacillus virus phi29
Primary publication:
Conservation of the capsid structure in tailed dsDNA bacteriophages: the pseudoatomic structure of phi29.
Morais MC, Choi KH, Koti JS, Chipman PR, Anderson DL, Rossmann MG
Mol Cell 18 149-59 (2005)
PMID: 15837419
Related structures: EMD-1120

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo 180-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-162580 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Major head protein Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 360 amino acids
Theoretical weight: 30.66 KDa
Source organism: Bacillus virus phi29
Expression system: Bacillus subtilis

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 7.9Å
Relevant EMDB volumes: EMD-1120
Expression system: Bacillus subtilis

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Citations

21 review citations

What does structure tell us about virus evolution?
Bamford et al. (2005)
20 more

2 mentions without citation

Cryo-EM structure of the bacteriophage T4 portal protein assembly at near-atomic resolution.
Sun et al. (2015)
1 more