1yui Summary

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SOLUTION NMR STRUCTURE OF THE GAGA FACTOR/DNA COMPLEX, REGULARIZED MEAN STRUCTURE

The structure was published by Omichinski, J.G., Pedone, P.V., Felsenfeld, G., Gronenborn, A.M., and Clore, G.M., in 1997 in a paper entitled "The solution structure of a specific GAGA factor-DNA complex reveals a modular binding mode." (abstract).

The structure was determined using NMR spectroscopy and deposited in 1996.

The experimental data on which the structure is based was also deposited.

This PDB entry contains a complex of 3 biomacromolecules, namely DNA (5'-D(*GP*CP*CP*GP*AP*GP*AP*GP*TP*AP*C)-3'), DNA (5'-D(*GP*TP*AP*CP*TP*CP*TP*CP*GP*GP*C)-3'), and GAGA-FACTOR.

It also contains one or more heterogenic compounds (e.g., ligands, co-factors, ions, modified amino acids, etc.); see here for a complete list.

The molecule most likely forms heterotrimers.

The following tables show cross-reference information to other databases (to obtain a list of all PDB entries sharing the same property or classification, click on the magnifying glass icon):


Chain Name UniProt Name of source organism % of UniProt sequence present in the sample Residues in the sample molecules % of residues observed
A GAGA-FACTOR Q08605 (319-372) (GAGA_DROME)search Drosophila melanogastersearch < 90% 54 100%


This entry contains 1 unique UniProt protein:

UniProt accession Name Organism PDB
Q08605 (319 - 372) GAGA-FACTOR Drosophila melanogaster

Chain Structural classification (SCOP) Structural classification (CATH) Sequence family (Pfam)
A Classic zinc finger, C2H2search Classic Zinc Fingersearch GAGA factorsearch

Chain ID Molecular function (GO)
A (Q08605) metal ion bindingsearch nucleic acid bindingsearch

Chain InterPro annotation
A Zinc finger, C2H2search Zinc finger C2H2-type/integrase DNA-binding domainsearch Zinc finger, GAGA-binding factorsearch Zinc finger, C2H2-likesearch