1x7d Summary


Crystal Structure Analysis of Ornithine Cyclodeaminase Complexed with NAD and ornithine to 1.6 Angstroms

The structure was published by Goodman, J.L., Wang, S., Alam, S., Ruzicka, F.J., Frey, P.A., and Wedekind, J.E., in 2004 in a paper entitled "Ornithine Cyclodeaminase: Structure, Mechanism of Action, and Implications for the u-Crystallin Family" (abstract).

This crystal structure was determined using X-ray diffraction at a resolution of 1.6 Å and deposited in 2004.

The experimental data on which the structure is based was also deposited.

This PDB entry contains multiple copies of the structure of ornithine cyclodeaminase.

It also contains one or more heterogenic compounds (e.g., ligands, co-factors, ions, modified amino acids, etc.); see here for a complete list.

The molecule most likely forms homodimers.

The following tables show cross-reference information to other databases (to obtain a list of all PDB entries sharing the same property or classification, click on the magnifying glass icon):

Chain Name UniProt Name of source organism % of UniProt sequence present in the sample Residues in the sample molecules % of residues observed
A ornithine cyclodeaminase Q88H32 (1-350) (Q88H32_PSEPK)search Pseudomonas putida KT2440search 100% 350 97%
B ornithine cyclodeaminase Q88H32 (1-350) (Q88H32_PSEPK)search Pseudomonas putida KT2440search 100% 350 97%

This entry contains 1 unique UniProt protein:

UniProt accession Name Organism PDB
Q88H32 (1 - 350) ornithine cyclodeaminase Pseudomonas putida

Chain Structural classification (SCOP) Structural classification (CATH) Sequence family (Pfam)
A, B (Q88H32) Ornithine cyclodeaminase-likesearch ornithine cyclodeaminase, domain 1search, NAD(P)-binding Rossmann-like Domainsearch PF02423: Ornithine cyclodeaminase/mu-crystallin familysearch

Chain ID Molecular function (GO)
A, B (Q88H32) nucleotide bindingsearch

Chain InterPro annotation
A, B Ornithine cyclodeaminase/mu-crystallinsearch NAD(P)-binding domainsearch Ornithine cyclodeaminase, N-terminalsearch