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PDBe Entry: 1ubo view

Three-dimensional Structure of The Carbon Monoxide Complex of [NiFe]hydrogenase From Desulufovibrio vulgaris Miyazaki F
Summary
Header OXIDOREDUCTASEsearch
Method X-RAY DIFFRACTION
Experiment Resolution: 1.35 Å, R-factor: 12.77%, Free R-factor: 16.24%, Spacegroup: P 21 21 21
Released 29/04/2003, deposition: 04/04/2003, last revision: 24/02/2009
Authors Ogata, H.search; Mizoguchi, Y.search; Mizuno, N.search; Miki, K.search; Adachi, S.search; Yasuoka, N.search; Yagi, T.search; Yamauchi, O.search; Hirota, S.search; Higuchi, Y.search
Primary citation Structural Studies of the Carbon Monoxide Complex of [NiFe]hydrogenase from Desulfovibrio vulgaris Miyazaki F: Suggestion for the Initial Activation Site for Dihydrogen
J.AM.CHEM.SOC.search vol:124, pag:11628-11635 (2002) [PubMed ID 12296727 ]search
Keywords High resolution crystal structuresearch, [NiFe]hydrogenasesearch, Oxidoreductasesearch, Carbon Monoxide Complexsearch
EC 1.12.2.1 ExPASy BRENDA search (S L)
Organism Desulfovibrio vulgaris str. 'Miyazaki F' 883search(S L)
UniProt Periplasmic [NiFe] hydrogenase small subunit precursor (EC 1.12.2.1) (NiFe hydrogenlyase small chain) P21853search (S)
Periplasmic [NiFe] hydrogenase large subunit precursor (EC 1.12.2.1) (NiFe hydrogenlyase large chain) P21852search (L)
Solvent L, S
Related entries 1ubh, 1ubj, 1ubk, 1ubl, 1ubm, 1ubr, 1ubt, 1ubu
Polymers
Id Name Type UniProt Residues Observed
S Periplasmic [NiFe] hydrogenase Small subunit Protein P21853 (PHNS_DESVM)search
267 100%
L Periplasmic [NiFe] hydrogenase Large subunit Protein P21852 (PHNL_DESVM)search
534 100%
Heterogens
Id Name Ligands
L MAGNESIUM ION MG search
S IRON/SULFUR CLUSTER SF4 search
S FE3-S4 CLUSTER F3S search
L (MU-SULPHIDO)-BIS(MU-CYS,S)-[TRICARBONYLIRON-DI-(CYS,S)NICKEL(II)](FE-NI) FNE search
L CARBON MONOXIDE CMO search
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