› 1tra

X-ray diffraction
3Å resolution

RESTRAINED REFINEMENT OF THE MONOCLINIC FORM OF YEAST PHENYLALANINE TRANSFER RNA. TEMPERATURE FACTORS AND DYNAMICS, COORDINATED WATERS, AND BASE-PAIR PROPELLER TWIST ANGLES

Released:
DOI: 10.2210/pdb1tra/pdb
PDB entry 1tra coloured by chain, front view.
PDB entry 1tra coloured by chain, side view.
PDB entry 1tra coloured by chain, top view.
Source organism: Saccharomyces cerevisiae
Primary publication:
Restrained refinement of the monoclinic form of yeast phenylalanine transfer RNA. Temperature factors and dynamics, coordinated waters, and base-pair propeller twist angles.
Westhof E, Sundaralingam M
Biochemistry 25 4868-78 (1986)
PMID: 3533142

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-195823 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
TRNAPHE Chain: A
Molecule details ›
Chain: A
Length: 76 nucleotides
Theoretical weight: 24.89 KDa
Source organism: Saccharomyces cerevisiae
Sequence domains: tRNA

Ligands and Environments

1 bound ligand:
Ligand MG 5 x MG
11 modified residues:
Ligand 2MG 1 x 2MG
Ligand H2U 2 x H2U
Ligand M2G 1 x M2G
Ligand OMC 1 x OMC
Ligand OMG 1 x OMG
Ligand YG 1 x YG
Ligand PSU 2 x PSU
Ligand 5MC 2 x 5MC
Ligand 7MG 1 x 7MG
Ligand 5MU 1 x 5MU
Ligand 1MA 1 x 1MA

Experiments and Validation Details

Entry percentile scores
Spacegroup: P21
Unit cell:
a: 56Å b: 33.3Å c: 63Å
α: 90° β: 90.4° γ: 90°
R-values:
R R work R free
0.168 not available not available

Quick links

Citations

9 review citations

Magnesium in man: implications for health and disease.
de Baaij et al. (2015)
8 more

19 mentions without citation

On the significance of an RNA tertiary structure prediction.
Hajdin et al. (2010)
18 more